Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02296 ATGTTAATGGGTTGCTGCTTTAGTGCAAAGATCAAAGCTGAGAGCCCTCCACGCAATGGTTTGAATTCAAAGGATGAAAGCAAAGAAGAGGATGGTTTGAGTGGTTTAAGCAGCAGGGTCTCCTCTTCATCTGTGCTTCTAACTTACAGGACAGAAGGTGAGATATTGCAGTCTAGCAATTTGAAGTGCTTCTCATTCAATGAGATACGAACTGCCACAAGGAACTTTCGACCAGATAGTTTGGTGGGTGAAGGTGGGTTTGGTTGTGTGTTTAAAGGGTGGATTGATGAGCACACACTTACCCCAACTAAACCAGGAACTGGATTTGTCATAGCTGTGAAGAGGCTTAACCAAGAGGGCACCCAGGGACACATTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGAGTCATCCTAATCTTGTGAAACTGGTTGGTTACTGCTTAGAGGATGACCACCGGATTTTGGTATATGAGTTTTTGGCCAAGGGCAGTTTGGATAATCATTTGTTTAGAAGGGCTTCTTACTTTCAGCCACTCTCTTGGAAAATCCGTATGAAGATTGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGTAGAAGTAATATATAGAGATTTCAAAACATCTAATATATTGCTTGATTCTAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAAGATGGACCAGAAGGTGACAAGAGCCATGTTTCTACAAGGGTAATGGGCACCTTAGGTTATGCTGCTCCTGAGTATATAGCCACAGGTCACCTAACAAAAAAGAGTGATATATACAGTTTTGGGGTTGTTCTCTTGGAACTTATGTCTGGCAAACGTGCATTGGACAAAAACAGGCCATCTGGGGAGCATCATTTAGTTGAATGGGCAAAGCCATTACTCATCAGCAAACGCAAGATCTCCCAAGTTATGGATGCCCGTATTGAAGGCCAATACTCATTGCGGGAAGCAATGAAAGTAGCTCACCTTGCAATTCAATGCGTATCTATAGAGACCAAATTTAGACCAAACATAGATGAGGTGGTGAGATCATTGGAGCAACTTCAAAATTTTAATGGAACAGGTGTCAATGAATCTTTAAATGGAGAAGCTACTTCTATTCCAAGCTCATCTGCTGCTTCTCCTCTACATAAGTAG 1176 0.4201 MLMGCCFSAKIKAESPPRNGLNSKDESKEEDGLSGLSSRVSSSSVLLTYRTEGEILQSSNLKCFSFNEIRTATRNFRPDSLVGEGGFGCVFKGWIDEHTLTPTKPGTGFVIAVKRLNQEGTQGHIEWLTEINYLGQLSHPNLVKLVGYCLEDDHRILVYEFLAKGSLDNHLFRRASYFQPLSWKIRMKIALDAAKGLAFLHSDEVEVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPEGDKSHVSTRVMGTLGYAAPEYIATGHLTKKSDIYSFGVVLLELMSGKRALDKNRPSGEHHLVEWAKPLLISKRKISQVMDARIEGQYSLREAMKVAHLAIQCVSIETKFRPNIDEVVRSLEQLQNFNGTGVNESLNGEATSIPSSSAASPLHK. 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02296 391 FunFam Probable serine/threonine-protein kinase PBL8 162 377 - -
Seca6g02296 391 Gene3D Phosphorylase Kinase; domain 1 51 161 - -
Seca6g02296 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Seca6g02296 391 SUPERFAMILY Protein kinase-like (PK-like) 55 360 IPR011009 -
Seca6g02296 391 PANTHER OS01G0588500 PROTEIN-RELATED 36 362 - -
Seca6g02296 391 MobiDBLite consensus disorder prediction 19 33 - -
Seca6g02296 391 MobiDBLite consensus disorder prediction 14 37 - -
Seca6g02296 391 FunFam Serine/threonine-protein kinase BIK1 42 161 - -
Seca6g02296 391 CDD STKc_IRAK 82 361 - -
Seca6g02296 391 Pfam Protein tyrosine and serine/threonine kinase 81 358 IPR001245 GO:0004672|GO:0006468
Seca6g02296 391 MobiDBLite consensus disorder prediction 372 391 - -
Seca6g02296 391 Gene3D Transferase(Phosphotransferase) domain 1 162 377 - -
Seca6g02296 391 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02296 391 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02296 Seca-Chr6 84387167 84391522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02296 54 374 Glycoside Hydrolase AT3G07070 46.273 7.88e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca6g02296 PK_Tyr_Ser-Thr 4.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02296 - - gmx:106795104 615.535