Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02274 ATGATTTTTGTAGTTACTACAACTACTCAGGCAACTGAGGCGCTCGAAATATTGAGGAAAAACAAAATTAAGTTTGGCCTCGTTATTAATAATGTAAATATGGCACCCGCGAATGGTTTTAAGCTTCTTGAGCAAGTGGTGCGTGAAATGGACTTACATATCATTATGTTGTCTGGGTATAATGATAAAAAGTCAGTGATGAAAGGTATGATGCATGGTGCATGTGCCTGCTTAATAAAACCCGATTAG 249 0.3735 MIFVVTTTTQATEALEILRKNKIKFGLVINNVNMAPANGFKLLEQVVREMDLHIIMLSGYNDKKSVMKGMMHGACACLIKPD. 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02274 82 ProSiteProfiles Response regulatory domain profile. 1 82 IPR001789 GO:0000160
Seca6g02274 82 SUPERFAMILY CheY-like 4 81 IPR011006 -
Seca6g02274 82 Pfam Response regulator receiver domain 4 81 IPR001789 GO:0000160
Seca6g02274 82 Gene3D - 2 82 - -
Seca6g02274 82 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 81 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02274 Seca-Chr6 83920740 83921079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02274 5 81 Response Regulator Gene Family AT2G25180 62.338 1.04e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca6g02274 Response_reg 1.2e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02274 - K14491 gmx:100803040 97.8265