Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02271 ATGAACGGTATTATGCATGGTGCATGTGTTTGCTTAATAAAACCAGTTAGAATTGAAGTGTCACGCAACATATGGAAACATGTTATAGGAAAGAAAAAGGAGAATGAGGATGCCTTAACTAGGAAAAAGTCTCGATTATTTTGGAATGCTAAACTACATAAAATATTTGTTATTATAGTTAATCAACTTGGTATTGATAAGGCTTATCCAAGGAAATTGCTAGAGTTGATCAATATTAAAGGTCTTACAAAACAACATGTAGCAAGTCATCTCCAGGTATAA 282 0.3227 MNGIMHGACVCLIKPVRIEVSRNIWKHVIGKKKENEDALTRKKSRLFWNAKLHKIFVIIVNQLGIDKAYPRKLLELINIKGLTKQHVASHLQV. 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02271 93 FunFam Two-component response regulator 39 93 - -
Seca6g02271 93 SUPERFAMILY Homeodomain-like 40 92 IPR009057 -
Seca6g02271 93 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 32 92 IPR044841 GO:0003700|GO:0006355
Seca6g02271 93 NCBIfam myb-like DNA-binding domain, SHAQKYF class 43 93 IPR006447 GO:0003677
Seca6g02271 93 Gene3D - 39 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02271 Seca-Chr6 83905894 83906427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02271 1 92 Response Regulator Gene Family AT4G31920 36.719 1.28e-23 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca6g02271 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02271 - K14491 mtr:25489924 105.531