Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02270 ATGTTTGTTTTATCATTTTTTTGTGTAGATCAGTTCTTTTTCTATATCTTCTTCAATGTTCCATCGATAACTTATTGCTTATGTGTTTCAGTCCTCCTGTTATTCATGATACTGAACTCTCATCAGATGTCACCGAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTATGCGACATGCCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGGCCACACAGAACTGCGTTTGCATATGCCTCCATCAATAGCACTCACAAGCCGAGGGCGTCTGCAGGGTCTTAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTACTGCACCTTCTATGACAGAGGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGTTTCTGGTCCCCAAAGGCAAGTAATCAGTCAGATCAATTTTTATATCCTCCCTCAGCAGAAGACCCAAGATAATTCAAATGCAGTTGGGAGCATGAAAGCCTCTGATGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGAGACGTACTTCGTAGCTTGCCCTGCTTGCATCAGTTTCACGCCAATTGCATCGATCCCTGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTTCGAGCAGGAACTGGGTGGAATGACAGTGGACATAATGATATCGCGGACATGGTTTGA 777 0.4414 MFVLSFFCVDQFFFYIFFNVPSITYCLCVSVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALTSRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQRQVISQINFYILPQQKTQDNSNAVGSMKASDDELTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGTGWNDSGHNDIADMV. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02270 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 244 IPR013083 -
Seca6g02270 258 PANTHER TARGET OF ERK KINASE MPK-1 29 244 - -
Seca6g02270 258 Pfam Ring finger domain 197 239 IPR001841 -
Seca6g02270 258 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Seca6g02270 258 CDD RING-H2_PA-TM-RING 197 239 - -
Seca6g02270 258 SMART ring_2 198 238 IPR001841 -
Seca6g02270 258 SUPERFAMILY RING/U-box 197 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02270 Seca-Chr6 83897151 83902545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02270 20 258 C3H Transcription Factor Family AT3G55530 72.314 7.48e-111 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02270 K16283 - gmx:100777936 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02270 6 83897151 83902545 Seca6g02270 6 83897151 83902545 ECH