Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02268 ATGATGTCTTCAGGGACATCCTCATATTGGTGCTACAGGTGCAGTCGGTTCGTGAGGGTCTGGAGACAGGACACGGTGGTTTGCCCTGATTGCGACGGTGGATTCATCGAGGAGATTGAACATCCGGCACGCTCAGTCCACGCGGATGGCCGGCGGCGAAGGTTTCCGGCTGCGGCGATGTATATGATCGGCCAACGCCCTGGTTCCGACCAAAATTCTCGCCCTGCTGCTCTCCGGCGAACCCGCCGGAACGGCGGTGACCGGTCGCCTTTCAATCCGGTGATCGTCCTCCGTGGCGGTGGATCGGCGGAGGGTACTGAAGGAGAGGGTCGTGGGTTCGAGCTTTTCTATGATGACGGTGCTGGTTCTGGTCTTAGGCCTTTGCCTCCAAGCATGTCAGAGTTTCTTCTGGGATCTGGATTTGATAGGTTATTGGAACAGCTTTCTCAGATTGAGATCAACGGTATTGGGAGGTACGAGCACCCTCCTGCATCAAAAGCTGCTATTGATTCTTTACCCACTATTGAGATTGATGAGAGTCATTTGGCCATGGAATCTCACTGTGCTGTTTGTAAAGAGCCTTTTGAGTTGGGAACCGCAGTGAGGGAAATGCCTTGTAAGCACATATACCATTCTGAATGTATCTTGCCATGGCTTGCACTTCACAATTCTTGCCCTGTTTGTCGCCATGAGTTGCCTGCTGATGCACCAAATCCACCCCCAACAGGGCATTCCCTTGCCTTGAATGAGGAAGATAATGTGGGGTTAACTATTTGGAGGTTACCTGGTGGTGGCTTTGCAGTGGGGAGATTTTCTGGTGGGAGAAGAGGTGCTGAGAGGGAACTTCCTGTTGTTTACACTGAAATGGATGGTGGGTTTAACAATGGGGGTGAGCCTAGGAGGATTTCTTGGTCTTCAAGGGGGAATAGAGGAAGAGAGAGTGGTGGGTTTCAAAGGTTGTTCAGGAATTTGTTTGGTTGTTTCAGAGGTGGGAGTGGAAGTGGAAGTGGAACTCAACATTCTAGTTCTAGTAGAGAATCTAGAACTTTAAGGGCAAGTTCATCTCGTTCAAGTATGGATCCCTCACCTCGTTCTCGCAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGAGCATGGTGA 1143 0.5066 MMSSGTSSYWCYRCSRFVRVWRQDTVVCPDCDGGFIEEIEHPARSVHADGRRRRFPAAAMYMIGQRPGSDQNSRPAALRRTRRNGGDRSPFNPVIVLRGGGSAEGTEGEGRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDESHLAMESHCAVCKEPFELGTAVREMPCKHIYHSECILPWLALHNSCPVCRHELPADAPNPPPTGHSLALNEEDNVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGRESGGFQRLFRNLFGCFRGGSGSGSGTQHSSSSRESRTLRASSSRSSMDPSPRSRRTWSMDVNSGMRAW. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02268 380 MobiDBLite consensus disorder prediction 64 107 - -
Seca6g02268 380 Pfam Protein of unknown function (DUF1117) 254 359 IPR010543 -
Seca6g02268 380 SMART ring_2 188 228 IPR001841 -
Seca6g02268 380 Pfam Ring finger domain 187 229 IPR001841 -
Seca6g02268 380 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Seca6g02268 380 MobiDBLite consensus disorder prediction 332 380 - -
Seca6g02268 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Seca6g02268 380 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Seca6g02268 380 MobiDBLite consensus disorder prediction 332 372 - -
Seca6g02268 380 MobiDBLite consensus disorder prediction 296 315 - -
Seca6g02268 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 233 - -
Seca6g02268 380 CDD RING-H2_RNF126-like 188 229 - -
Seca6g02268 380 SUPERFAMILY RING/U-box 168 242 - -
Seca6g02268 380 FunFam E3 ubiquitin-protein ligase RING1-like 150 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02268 Seca-Chr6 83866574 83867716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02268 127 235 C3H Transcription Factor Family AT5G01980 43.119 1.28e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02268 K11982 - gmx:100807324 610.912