Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca6g02268 | ATGATGTCTTCAGGGACATCCTCATATTGGTGCTACAGGTGCAGTCGGTTCGTGAGGGTCTGGAGACAGGACACGGTGGTTTGCCCTGATTGCGACGGTGGATTCATCGAGGAGATTGAACATCCGGCACGCTCAGTCCACGCGGATGGCCGGCGGCGAAGGTTTCCGGCTGCGGCGATGTATATGATCGGCCAACGCCCTGGTTCCGACCAAAATTCTCGCCCTGCTGCTCTCCGGCGAACCCGCCGGAACGGCGGTGACCGGTCGCCTTTCAATCCGGTGATCGTCCTCCGTGGCGGTGGATCGGCGGAGGGTACTGAAGGAGAGGGTCGTGGGTTCGAGCTTTTCTATGATGACGGTGCTGGTTCTGGTCTTAGGCCTTTGCCTCCAAGCATGTCAGAGTTTCTTCTGGGATCTGGATTTGATAGGTTATTGGAACAGCTTTCTCAGATTGAGATCAACGGTATTGGGAGGTACGAGCACCCTCCTGCATCAAAAGCTGCTATTGATTCTTTACCCACTATTGAGATTGATGAGAGTCATTTGGCCATGGAATCTCACTGTGCTGTTTGTAAAGAGCCTTTTGAGTTGGGAACCGCAGTGAGGGAAATGCCTTGTAAGCACATATACCATTCTGAATGTATCTTGCCATGGCTTGCACTTCACAATTCTTGCCCTGTTTGTCGCCATGAGTTGCCTGCTGATGCACCAAATCCACCCCCAACAGGGCATTCCCTTGCCTTGAATGAGGAAGATAATGTGGGGTTAACTATTTGGAGGTTACCTGGTGGTGGCTTTGCAGTGGGGAGATTTTCTGGTGGGAGAAGAGGTGCTGAGAGGGAACTTCCTGTTGTTTACACTGAAATGGATGGTGGGTTTAACAATGGGGGTGAGCCTAGGAGGATTTCTTGGTCTTCAAGGGGGAATAGAGGAAGAGAGAGTGGTGGGTTTCAAAGGTTGTTCAGGAATTTGTTTGGTTGTTTCAGAGGTGGGAGTGGAAGTGGAAGTGGAACTCAACATTCTAGTTCTAGTAGAGAATCTAGAACTTTAAGGGCAAGTTCATCTCGTTCAAGTATGGATCCCTCACCTCGTTCTCGCAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGAGCATGGTGA | 1143 | 0.5066 | MMSSGTSSYWCYRCSRFVRVWRQDTVVCPDCDGGFIEEIEHPARSVHADGRRRRFPAAAMYMIGQRPGSDQNSRPAALRRTRRNGGDRSPFNPVIVLRGGGSAEGTEGEGRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDESHLAMESHCAVCKEPFELGTAVREMPCKHIYHSECILPWLALHNSCPVCRHELPADAPNPPPTGHSLALNEEDNVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGRESGGFQRLFRNLFGCFRGGSGSGSGTQHSSSSRESRTLRASSSRSSMDPSPRSRRTWSMDVNSGMRAW. | 381 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca6g02268 | 380 | MobiDBLite | consensus disorder prediction | 64 | 107 | - | - | |
Seca6g02268 | 380 | Pfam | Protein of unknown function (DUF1117) | 254 | 359 | IPR010543 | - | |
Seca6g02268 | 380 | SMART | ring_2 | 188 | 228 | IPR001841 | - | |
Seca6g02268 | 380 | Pfam | Ring finger domain | 187 | 229 | IPR001841 | - | |
Seca6g02268 | 380 | Pfam | zinc-ribbon | 8 | 39 | IPR039525 | GO:0061630 | |
Seca6g02268 | 380 | MobiDBLite | consensus disorder prediction | 332 | 380 | - | - | |
Seca6g02268 | 380 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 235 | IPR013083 | - | |
Seca6g02268 | 380 | ProSiteProfiles | Zinc finger RING-type profile. | 188 | 229 | IPR001841 | - | |
Seca6g02268 | 380 | MobiDBLite | consensus disorder prediction | 332 | 372 | - | - | |
Seca6g02268 | 380 | MobiDBLite | consensus disorder prediction | 296 | 315 | - | - | |
Seca6g02268 | 380 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 69 | 233 | - | - | |
Seca6g02268 | 380 | CDD | RING-H2_RNF126-like | 188 | 229 | - | - | |
Seca6g02268 | 380 | SUPERFAMILY | RING/U-box | 168 | 242 | - | - | |
Seca6g02268 | 380 | FunFam | E3 ubiquitin-protein ligase RING1-like | 150 | 235 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca6g02268 | Seca-Chr6 | 83866574 | 83867716 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca6g02268 | 127 | 235 | C3H Transcription Factor Family | AT5G01980 | 43.119 | 1.28e-24 | 103 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca6g02268 | K11982 | - | gmx:100807324 | 610.912 |