Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02264 ATGGCAAAATCACTCATGCTTCTTCTCTGTTTCCTGATTCTTCTGACCTCAAACCCTGTAAAATCCCAGCATGATGAGTTGTTCTTTGATGGGTTCCATGGTGCTGCAACCAACATAAGCTTAAACGGAGTTGCAGTGATTGAGCGCAGGGGCATACTTCGCTTAACAAACGACACTCAAAGAGTAATTGGGCATGCGTTTTATTCAACCCCAATCCAGTTCAAGAACTCTTCCACCAACGCCAAAGTTTTCTCCTTTTCCACTGCTTTTGCTTTTGCAATAATCCCCCAGTACCCAAAACTTGGTGGACATGGCTTTGCCTTCACAATTTCTCGCTCCAAGGTGCTTCCAGGTGCATATCCCAGCCAGTACCTGGGCCTCCTCAACCCAAACGATGTGGGGAACTTCTCAAACCACCTTTTCGCTGTAGAATTCGACACTGTCCAAGACTTCGAATTCAATGACATCAATGGCAACCATGTGGGTATCAACCTGAATAACATGGCATCCAACAAATCAGTTGAAGCTGGTGTTTTCTCTGATGGGTCAAAGAATAAGCAAGACCTCAATTTGAAGAGTGGCAAGGTGATTCAAGCATGGGTGGACTATGATTCCCCTAGGAATCAATTGGAAGTTAGACTCTCCCTAACTTCTACAAAACCCACTTCCCCAATCTTATCATACCAAGTGGATCTCTCACCAATTCTAGAAGACTCTATGTATGTGGGGTTCTCTGCTTCAACTGGGTTGCTTGCGAGTTGGCACTATATCTTAGGTTGGAGCTTCAAGATAAATGGAGAGGCAAAAACCCTGTCTTTGGAAAATCTCCCTTCGCTCTCTGCACACAGCAACACTAAAAAAGCCTTAATCTTGGGACTCTCTCTTACCGTTACGATTCTAATACTTGCCACAATTGGGTTAGCACTTTACCTTAATTGGAAAAACGCTGATGTGATCGAAGCTTGGGAGTTAGATATTGGTCCCCACAGATTTCCCTACAAAGAACTGAAACAAGCCACAAGAGGATTCAAAGACAAGAACCTTCTCGGTTTCGGTGGATTCGGTAAAGTTTACAAAGGGGTACTCCCAAATTCCAACACCGAAATCGCCGTGAAGCGAATTTCCCACGAATCAAAACAAGGATGGCAACAATTTATCTCAGAAATCGCCACCATTGGCAGGCTCCGCCACAGGAACCTTGTACAGTTACTAGGTTGGTGTCGAAAGCATAACGATCTACTCTTAGTCTACGATTTCATGCACAACGGTAGCTTAGACAAGTACCTGTTCGATGAAGAACCAAGAGGAAAATTGAGCTGGGAGCAAAGGTTCAAGGTCATAAAAGGGGTGGCTTCAGGGCTTGTTTATTTGCACGAGGAATGGGAACAAACGGTGATTCACAGAGACATTAAAGCAGGGAACGTTCTTTTGGATGCTGAAATGAATGGTAGGCTCGGGGACTTTGGTTTGGCGAAGCTATACGATCATGGTTCGAACCCAAGCACGACGAGGGTTGTGGGAACGTTGGGGTATTTGGCGCCTGAGCTCACGCGCACGGGGAAACCCACGACGAGTTCTGATGTGTTTGCGTTTGGCGCGTTGTTGTTGGAGGTCGTGTGTGGGAGAAGGCCCATTGAGCCCAAAGCGTTGCCGGAGGAGCTTATTTTGGTGGATTGGGTGTGGGATCGGTGGCGCGTGGGGGCGGCGTTGGAGGTTGTGGACCCCAAGTTGGGTGGGATTTTCGATGAGGTGGAGGCGATGTTGGTGATACAGGTGGGGTTGTTGTGCTCCGATGAGAATCCGGAAGCGAGGCCCACCATGAGGCAGGTGGTGAGGTACTTGGAAGGGGAGGTGCCGCCACCGGAGCTGCAGGCGTTTGATGGGAAGAAGGGTGGTGGGGTCGCCGTTAGTGGCGGTGATTCGTATCGGACGTCGTTTTATGACAGAGCGAATACGTGGTCGTCGGTGGGTGATGACGTGGAGTGTGGATCTGCTTCGTCTCTCTCTCTCTCCGGTGCCAGGGAGGAGGGTAGGTAG 2037 0.4855 MAKSLMLLLCFLILLTSNPVKSQHDELFFDGFHGAATNISLNGVAVIERRGILRLTNDTQRVIGHAFYSTPIQFKNSSTNAKVFSFSTAFAFAIIPQYPKLGGHGFAFTISRSKVLPGAYPSQYLGLLNPNDVGNFSNHLFAVEFDTVQDFEFNDINGNHVGINLNNMASNKSVEAGVFSDGSKNKQDLNLKSGKVIQAWVDYDSPRNQLEVRLSLTSTKPTSPILSYQVDLSPILEDSMYVGFSASTGLLASWHYILGWSFKINGEAKTLSLENLPSLSAHSNTKKALILGLSLTVTILILATIGLALYLNWKNADVIEAWELDIGPHRFPYKELKQATRGFKDKNLLGFGGFGKVYKGVLPNSNTEIAVKRISHESKQGWQQFISEIATIGRLRHRNLVQLLGWCRKHNDLLLVYDFMHNGSLDKYLFDEEPRGKLSWEQRFKVIKGVASGLVYLHEEWEQTVIHRDIKAGNVLLDAEMNGRLGDFGLAKLYDHGSNPSTTRVVGTLGYLAPELTRTGKPTTSSDVFAFGALLLEVVCGRRPIEPKALPEELILVDWVWDRWRVGAALEVVDPKLGGIFDEVEAMLVIQVGLLCSDENPEARPTMRQVVRYLEGEVPPPELQAFDGKKGGGVAVSGGDSYRTSFYDRANTWSSVGDDVECGSASSLSLSGAREEGR. 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02264 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 279 IPR013320 -
Seca6g02264 678 FunFam L-type lectin-domain containing receptor kinase S.4 23 270 - -
Seca6g02264 678 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Seca6g02264 678 FunFam L-type lectin-domain containing receptor kinase S.4 420 626 - -
Seca6g02264 678 SUPERFAMILY Protein kinase-like (PK-like) 324 621 IPR011009 -
Seca6g02264 678 MobiDBLite consensus disorder prediction 657 671 - -
Seca6g02264 678 CDD lectin_legume_LecRK_Arcelin_ConA 29 266 IPR001220 GO:0030246
Seca6g02264 678 CDD STKc_IRAK 349 616 - -
Seca6g02264 678 Pfam Protein kinase domain 343 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02264 678 PANTHER - 16 619 - -
Seca6g02264 678 Gene3D Transferase(Phosphotransferase) domain 1 420 626 - -
Seca6g02264 678 SMART serkin_6 343 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02264 678 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524
Seca6g02264 678 ProSiteProfiles Protein kinase domain profile. 343 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02264 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Seca6g02264 678 Gene3D - 26 273 - -
Seca6g02264 678 FunFam Lectin-domain containing receptor kinase A4.3 328 419 - -
Seca6g02264 678 MobiDBLite consensus disorder prediction 657 678 - -
Seca6g02264 678 Pfam Legume lectin domain 28 276 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02264 Seca-Chr6 83753700 83755757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02264 20 623 Receptor kinase-like Gene Family AT3G55550 62.684 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca6g02264 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02264 - - gmx:100787552 952.199