Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02258 ATGGCGAATCGTTGGTGGGCTGGGAGTGTGGGTATGAGACAAACGGATTCGATGTCACCATCTCCATCACTTCAACTAAGAAGAGAGCAAGAATTCATGGATAACAACAACAACAACTCTACTCCGACTAACAGCAGCAACAGCAACACCAACGCCGAGGAAGAGGAGAGCCGAGACGACGACAACAACAACAACAACACCGGTTCGGAGCCAGGAAGCAGCGGTCGAAGGCCACGTGGCAGGCCACCAGGTTCAAAGAACAAGCCCAAACCACCCATTGTGATAACCAAGGAAAGCCCCAACGCGCTTCGAAGCCACGTGTTGGAAATCACAAGCGGAAGTGACGTGGCGGAGAGCATCGCTACCTTCGCTAACCGTCGCCACCGTGGTGTGTCGGTGCTGAGTGGGAGTGGCATTGTCACGAATGTCACCCTTCGACAACCAGCTGCTCCTGGTGGGATTATCACTCTCCATGGAAGGTTCGAGATACTTTCACTATCCGGTGCGTTTCTGCCTTCACCTTCTCCACCTGGGGCCACTGGACTCACTGTTTACTTAGCCGGTGGTCAGGGACAGGTTGTTGGTGGTTCCGTGGCTGGTTCATTGGTAGCTTCAGGGCCTGTGATGGTGATAGCAGCTACTTTTGCGAATGCTACTTATGAGAGATTGCCGTTAGAGGAAGAACAAACTGAGGAGGAAATGCAAGTTCAGCAGCAATCAGGAGTGAATTCAACAACTGTTGGAACTAGTACTCCAGCTTCTCAAGGCTTAGGTGAACAACCACAACAACAACAGGTTTCAATGCCAATGTATAATTTGCCTCCAAATTTGATACACAATGGTCAGACTCAGATGCCTCATGATGTGTTTTGGGGTCATCCACCGCGTCCTCCTCCTTCTTTCTGA 906 0.5088 MANRWWAGSVGMRQTDSMSPSPSLQLRREQEFMDNNNNNSTPTNSSNSNTNAEEEESRDDDNNNNNTGSEPGSSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEITSGSDVAESIATFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGIITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGSVAGSLVASGPVMVIAATFANATYERLPLEEEQTEEEMQVQQQSGVNSTTVGTSTPASQGLGEQPQQQQVSMPMYNLPPNLIHNGQTQMPHDVFWGHPPRPPPSF. 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02258 301 PIRSF ESCAROLA 14 300 IPR014476 GO:0003680
Seca6g02258 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 230 - -
Seca6g02258 301 CDD DUF296 104 215 IPR005175 -
Seca6g02258 301 MobiDBLite consensus disorder prediction 10 51 - -
Seca6g02258 301 FunFam AT-hook motif nuclear-localized protein 103 231 - -
Seca6g02258 301 MobiDBLite consensus disorder prediction 227 264 - -
Seca6g02258 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 104 216 IPR005175 -
Seca6g02258 301 Gene3D - 103 243 - -
Seca6g02258 301 ProSiteProfiles PPC domain profile profile. 100 237 IPR005175 -
Seca6g02258 301 MobiDBLite consensus disorder prediction 1 100 - -
Seca6g02258 301 MobiDBLite consensus disorder prediction 234 264 - -
Seca6g02258 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 294 IPR014476 GO:0003680
Seca6g02258 301 MobiDBLite consensus disorder prediction 281 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02258 Seca-Chr6 83606926 83607855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02258 1 298 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 51.839 2.06e-79 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02258 - - qsu:112039774 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01024 8 14388187 14389110 Seca6g02258 6 83606926 83607855 PCT