Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02246 ATGTGTTGTGGTGTTGTTGGAGAGGGTGAGACTCAGGCGAGTTCACGCCCCTCCAGGCGCCGGAGTTTGGACCTTATTTCCTTCAAATACATCGCCGACGTGGCAGTGCCGGAGTCTTCCCGGAAACGACAGAAGCTGGATCTCCGTGGTCCCAGGGATTACGAAAACGCAGTTGAAAATCGTGATGAATCAAACGATGGCTGCTCCCAAAAGGAGGAGGAGGAGGAGAAAGAATCCAAAGTAAACGACGAAGTCGTTTCCGAAGCGAAACTGTCGTCCGTTTCTGAGGCTACTTTAGAAGTTGAAGAGTGTCCAAAGTTTGGCGTGACGTCCGTTTGCGGAAGAAGAAGGGACATGGAAGATTCCGTTTCGGTTCGCCCTTCCTTCTCCGAACCAAGCTTTCACTACTTCGGTGTTTTCGACGGTCACGGTTGCTCTCATGTTGCGACCATGTGCAAGGAGAGGCTTCACGAGATTGTGCAGGAAGAGATTCACAAAGCGAAAGAGAATTTGGAATGGAAGAACACGATGAAGCAAGGTTTCGCTCGCATGGATGACGAGGTTCTGAGATGGAACCAGAACAACCAAACCTTCAGTTGCAGGTGCGAGCTTCAGACTCCTCACTGCGACGCCGTCGGATCCACCGCCGTTGTCGCCGTCGTCACGCCGGACAAAGTCATCGTCTCTAACTGCGGCGACTCTCGCGCCGTTCTCTGCCGAAACGGCGTCGCCATCCCCCTCTCGGACGATCACAAGGTTGCTTTTCTTTTTCCCTCATTTTCCTCTCCTCCGGACCGACCCGACGAATTGCTCCGGGTCCAAGAGGCTGGAGGGCGCGTGATCTTTTGGGATGGGCCAAGAGTGCTTGGGGTGCTGGCCATGTCACGAGCCATAGGTGACAATTATCTGAAGCCGTACGTGATTTCGGAGCCTGAAGTGACGGTAACGGAGCGGAAGGATGAGGATGAGTGTTTGATACTAGCAAGTGATGGGCTATGGGACGTGGTGTCAAACGACACCGCATGTGGAGTGGTGAGGATGTGTCTCAAGGCGCAGAAGGTGCCGTCGCCGCCGGGGTCTCCCGGCAATGACCTGACGGCGGACGGTTCTGACCGGGCATGCTCCGATGCGTCCATTCTGTTGACCAAGTTGGCGTTGGCGAGGCACAGTTCGGATAATGTGAGCGTGGTGGTGGTTGATTTGAGGAGGGATCAACGAAAATCTTCCTCGAATTCGAACAAAGTTTAA 1248 0.5401 MCCGVVGEGETQASSRPSRRRSLDLISFKYIADVAVPESSRKRQKLDLRGPRDYENAVENRDESNDGCSQKEEEEEKESKVNDEVVSEAKLSSVSEATLEVEECPKFGVTSVCGRRRDMEDSVSVRPSFSEPSFHYFGVFDGHGCSHVATMCKERLHEIVQEEIHKAKENLEWKNTMKQGFARMDDEVLRWNQNNQTFSCRCELQTPHCDAVGSTAVVAVVTPDKVIVSNCGDSRAVLCRNGVAIPLSDDHKVAFLFPSFSSPPDRPDELLRVQEAGGRVIFWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERKDEDECLILASDGLWDVVSNDTACGVVRMCLKAQKVPSPPGSPGNDLTADGSDRACSDASILLTKLALARHSSDNVSVVVVDLRRDQRKSSSNSNKV. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02246 415 PANTHER PROTEIN PHOSPHATASE 74 401 IPR015655 GO:0004722|GO:0006470
Seca6g02246 415 ProSitePatterns PPM-type phosphatase domain signature. 136 144 IPR000222 GO:0043169
Seca6g02246 415 FunFam Protein phosphatase 2C 37 101 408 - -
Seca6g02246 415 SUPERFAMILY PP2C-like 105 402 IPR036457 -
Seca6g02246 415 CDD PP2Cc 106 354 IPR001932 -
Seca6g02246 415 Gene3D - 101 411 IPR036457 -
Seca6g02246 415 SMART PP2C_SIG_2 120 401 IPR001932 -
Seca6g02246 415 MobiDBLite consensus disorder prediction 38 87 - -
Seca6g02246 415 MobiDBLite consensus disorder prediction 38 85 - -
Seca6g02246 415 SMART PP2C_4 94 399 IPR001932 -
Seca6g02246 415 Pfam Protein phosphatase 2C 107 393 IPR001932 -
Seca6g02246 415 ProSiteProfiles PPM-type phosphatase domain profile. 106 401 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02246 Seca-Chr6 83374078 83376065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02246 79 407 PP2C-type Phosphatase Gene Family AT1G07430 59.053 1.74e-141 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02246 K14497 - gmx:100776356 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01020 8 14266615 14267670 Seca6g02246 6 83374078 83376065 ECH
Seca6g02246 6 83374078 83376065 Seca6g02246 6 83374078 83376065 ECH
Seca8g01020 8 14266615 14267670 Seca6g02246 6 83374078 83376065 PCT