Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02239 ATGCATTGCACTGTTGGTGTGGTGAAGACGCGTTTTGAGGGATCCAAACAGGGTGTTTTTGTGCCGTTATCGAACATGGGCCGTGATTTTAAGGAGTTGTTTGAATCTCAAGTTGGTTGTGACATAGTTTTCAAGGTCAAGGGTGAGAGTTTCAAGGCTCATAAGCTGATTCTTGCTGCCCGGTCCCCTGTGTTTAGAGCGCAGTTTTTTGGACTTGTTGGGGATCCTAAGTTAGAGGAAGTAGTGGTAGAGGATATTGAGCCCTTTATCTTCAAGGCAATGCTTCTCTATATTTACTCAGACAAACTTCCTGACATCTATGAGGTCATGGGTTCAATATACATGTGCTCATATACTGTCATGGTGCAGCATCTCTTGGCTGCTGCTGATCTCTATAATCTTGATAGGCTAAAGCTGTTATGTGAATCAAAATTGTGTGAAGAAATCAATACTGATACGGTGGCCACAACACTTGCCCTGGCTGAGCAACACCACTGCCCAGAGCTCAAGGCAATCTGTTTGAAATTCATTGCAAATCCACCAAACTTGGGAGCTGTAATGCAGTCCGAAGCTTTTGTGCATTTGAAAGAGAGCTGCCCCTCAATGTTGTTGGAATTGCTGGAGACATTTGCATCAGTGGATGATAACTCAGGCCAGACGTTGAGCAGGAAGAGAAGTGGCAGTAGCATATATGGCCAAGATTTAGCAGACGGGGCAGCTGCTGAATCAGCTAATCCAAATGGCAGGCGGATCAGGAGGCGGACATAA 768 0.4531 MHCTVGVVKTRFEGSKQGVFVPLSNMGRDFKELFESQVGCDIVFKVKGESFKAHKLILAARSPVFRAQFFGLVGDPKLEEVVVEDIEPFIFKAMLLYIYSDKLPDIYEVMGSIYMCSYTVMVQHLLAAADLYNLDRLKLLCESKLCEEINTDTVATTLALAEQHHCPELKAICLKFIANPPNLGAVMQSEAFVHLKESCPSMLLELLETFASVDDNSGQTLSRKRSGSSIYGQDLADGAAAESANPNGRRIRRRT. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02239 255 SUPERFAMILY POZ domain 22 147 IPR011333 -
Seca6g02239 255 ProSiteProfiles BTB domain profile. 40 103 IPR000210 GO:0005515
Seca6g02239 255 CDD BACK_AtBPM-like 146 209 IPR034090 -
Seca6g02239 255 CDD BTB_POZ_BPM_plant 26 146 - -
Seca6g02239 255 Gene3D Potassium Channel Kv1.1; Chain A 17 144 IPR011333 -
Seca6g02239 255 FunFam BTB-POZ and math domain 1 16 143 - -
Seca6g02239 255 Gene3D - 148 229 - -
Seca6g02239 255 SMART BTB_4 40 149 IPR000210 GO:0005515
Seca6g02239 255 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 2 205 IPR045005 GO:0016567
Seca6g02239 255 Pfam BTB/POZ domain 30 147 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02239 Seca-Chr6 83322327 83330075 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca6g02239 BTB 6.5e-27 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02239 K10523 - gmx:100778300 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04961 2 136219577 136224276 Seca6g02239 6 83322327 83330075 ECH
Seca6g02239 6 83322327 83330075 Seca6g02239 6 83322327 83330075 ECH