Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02236 ATGGAGAATGAGTGTGTTAATCTGAGTGATGATAATGTATTTGGAAAGATAGATGGTGAAGAGGTAGATGGGGAAGATGTTGATGGAAAGGTAGATGGTGAAGAAGAGTATAAAAAAATGTGGCAGTTAACAAGTGAAGACATACAAGGGCTTGAATTTGGTTCTGAGGAAGAAGCATATGATTTCTATTCCAACTATGCTTGGTGCCATGGTTTTGCTGTAAGAAAAGATGATGTAGGTTATATTGGCAGAGGGTCTGGCAAAGTTAAAGTGATGCGTCAATTTGTTTGTAATAGAGAGGGGTTGAGGAATAAAAAACATTTGGAGAGGGTGGATCGAAAAAGAGAGTCTAAGGCTTTAACGCGAAGTAATTGTCTTGCTAAGCTTCGTGTTCATTTAGACTTGTGGTCTGGGAAGTGGGTAGTGATTAGCTTTGAGGAAAGTCATAATCATGTCTTAACCCCTCCTCAATTTGTTCATCTTATGTCTTCGTATAGAGGTCTTACTAATGCTGATAAGGCACAAGTAAACATCTTGTATTCGGTTGGAGTTAGAACTTGTCATATAATGGGTTTTATGATGGGTCAAAAAGGTGGATATGAAGATCTTGGTTTTTGA 618 0.3803 MENECVNLSDDNVFGKIDGEEVDGEDVDGKVDGEEEYKKMWQLTSEDIQGLEFGSEEEAYDFYSNYAWCHGFAVRKDDVGYIGRGSGKVKVMRQFVCNREGLRNKKHLERVDRKRESKALTRSNCLAKLRVHLDLWSGKWVVISFEESHNHVLTPPQFVHLMSSYRGLTNADKAQVNILYSVGVRTCHIMGFMMGQKGGYEDLGF. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02236 205 Pfam FAR1 DNA-binding domain 61 154 IPR004330 -
Seca6g02236 205 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 19 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02236 Seca-Chr6 83290797 83291489 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g02236 FAR1 2.5e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02236 - - ccaj:109792835 216.083