Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02234 ATGTTTTCGTGCATATATGATATAACTGTGAGCATGCACTGCTCTGCTCTCCCACCAATGGAATCATCCACGACGAGGCTCCTCCTCGTGACGGCGGCGCTGCTGCTGCTAACATGCGCTACACACGTGATGTCCGCAACGCCGTGTCCTCGGTGCGGCAACACCACGGTGCCCTTCCCTCTGAGCACCGCCGCCACTTGCGGCGACCCGTCGTACAAAGTCCGGTGCACCTCCTCCGGCACGCTTATGTTCGACACGCTCAACAACTCATACCCAATCGAGTCAATTAACCCGAAAACCCAGCGCTTTGTGATCCGACCCGCTCCAATTATACCCAACACATGCGTGTCCACCGATAAGGTCCACCAGGGGATCCAACTGAACAACACGCTACCTTTCAACATCACGAGCTCCAACACCATCGTTTATCTCAATTGTACCCTCACTCTCCTTCAGTCACCGCTCAATTGCTCCTCCGCCAGCGTCTGTCATGCTTACATCAACGCCACCGCCTCCGCCTCCGCGTGCCAGGCCGGTCCACTCTGCTGCACCTACCGAACCGGTGGGTCCAGTAACTCCTACATGATTCGGGTCAGAGACTCTGGTTGTAGTGCTTACTCAAGCTTCGTGAACCTTGACCCGGGTTCACCAGTGAACCGCTGGCCCCAACCCGGTTTGGAGATTCAGTGGCTGTCGCCCAAAGAAACCGTTTGTGGGTCCCAGGGAGATTGTGATGCTGCCACGTCGACTTGTGGGCCCGATACATCCTCCGCCAATGGGATCAAGAGGTGTTTCTGTAACAGTGGGCTTGTGTGGGACGCTATTCAAGGGGTGTGCACCCAAAGAATTACTTGCCAGAACCCGGATGATTGCAACGATTCAACTAACAAAACAGCATTAATAGCAGGTTTAATATGCGGGATTGGAGGTGTACTCATCATTGCCACCATTGCTGTTCTTTTTTACAAACGTAACAAACGCATTAGAGAAGCACAAGAACGCTTAGCCAAGGAACGTGAAGGAATTCTGAATGTGAGTGGTGGGAGCAGAGCAGCTAAACTTTTTTCTGGCAAAGAGATAAAGAAAGCTACCAAGAACTTCTCCAGTGATCGTCTTCTTGGTGTTGGTGGGTATGGTGAAGTGTACAAGGGCATTCTTGAAGATGGCACTGTTGTTGCTGTCAAGTGTGCTAAGCTTGGAAACGCCAAAGGCACTGATCAAGTCCTTAATGAGGTTCGCATATTATGCCAAGTCAACCATCGCAACCTTGTTGGTCTACTTGGTTGTTGTGTGGAATTGGAGCAACCCATTTTGGTTTATGAGTTCATTGAAAATGGGACCCTTGGGGATCATTTGCAAGGTGAAGTGCCAAAGGGGCGTGCCATACTTACCTGGATTCATCGCCTTCTCATTGCCCGTGACACAGCTGAAGGTCTTGCTTACCTTCACTTCATGGCCGTGCCTCCTATATACCATAGAGATGTCAAGTCTAGCAACATTCTGCTAGATTTCAAGATGAATGCCAAGGTTTCAGATTTTGGGTTATCTAGGCTGGCTCAAACAGATATGAGTCATATCACTACTTGTGCTCAGGGGACCCTTGGGTACCTTGATCCTGAATATTACAGGAACTACCAATTGACTGATAAGAGTGATGTTTACAGTTTTGGGGTGGTGCTGCTTGAGCTTTTGACAGCTCAGAAGGCAATAGATTTTAACAGGCCACCTGATGATGTGAACTTGGCAGTTTATGTGCAGCGGATGGTGGAGGAAGAAAAGTTGATGGATGTCATTGATCCAATGTTGAAAAGTGGTGGAGCTACTACTATTAAGTTGGAAACGATGAAGGCATTGGCATTTCTGGCATTGGGCTGTTTGGAGGAAAAGAGACAGAATCGACCTTCAATGAAAGAGGTAGCAGAGGAGATTGAGTATATCATTAGTATTGCCTCAGCAAAGGAGGTGGTGGTGGAGAAGTAG 1980 0.4924 MFSCIYDITVSMHCSALPPMESSTTRLLLVTAALLLLTCATHVMSATPCPRCGNTTVPFPLSTAATCGDPSYKVRCTSSGTLMFDTLNNSYPIESINPKTQRFVIRPAPIIPNTCVSTDKVHQGIQLNNTLPFNITSSNTIVYLNCTLTLLQSPLNCSSASVCHAYINATASASACQAGPLCCTYRTGGSSNSYMIRVRDSGCSAYSSFVNLDPGSPVNRWPQPGLEIQWLSPKETVCGSQGDCDAATSTCGPDTSSANGIKRCFCNSGLVWDAIQGVCTQRITCQNPDDCNDSTNKTALIAGLICGIGGVLIIATIAVLFYKRNKRIREAQERLAKEREGILNVSGGSRAAKLFSGKEIKKATKNFSSDRLLGVGGYGEVYKGILEDGTVVAVKCAKLGNAKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPILVYEFIENGTLGDHLQGEVPKGRAILTWIHRLLIARDTAEGLAYLHFMAVPPIYHRDVKSSNILLDFKMNAKVSDFGLSRLAQTDMSHITTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFNRPPDDVNLAVYVQRMVEEEKLMDVIDPMLKSGGATTIKLETMKALAFLALGCLEEKRQNRPSMKEVAEEIEYIISIASAKEVVVEK. 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02234 659 Gene3D Transferase(Phosphotransferase) domain 1 443 657 - -
Seca6g02234 659 CDD STKc_IRAK 373 644 - -
Seca6g02234 659 FunFam Wall-associated receptor kinase-like 20 329 442 - -
Seca6g02234 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Seca6g02234 659 Pfam Protein tyrosine and serine/threonine kinase 370 642 IPR001245 GO:0004672|GO:0006468
Seca6g02234 659 Gene3D Phosphorylase Kinase; domain 1 328 442 - -
Seca6g02234 659 SUPERFAMILY Protein kinase-like (PK-like) 349 643 IPR011009 -
Seca6g02234 659 FunFam Wall-associated receptor kinase-like 20 443 656 - -
Seca6g02234 659 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 37 646 IPR044652 GO:0004672
Seca6g02234 659 ProSiteProfiles Protein kinase domain profile. 367 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02234 659 Pfam Wall-associated receptor kinase galacturonan-binding 49 105 IPR025287 GO:0030247
Seca6g02234 659 SMART serkin_6 367 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02234 659 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02234 Seca-Chr6 83273742 83279617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02234 27 653 Receptor kinase-like Gene Family AT5G02070 52.160 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca6g02234 PK_Tyr_Ser-Thr 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02234 - - gmx:100305415 1070.07