Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02233 ATGAAGGCACTGATTCTGGTTGGAGGGTTTGGAACAAGATTGAGGCCATTGACACTCAGTGTTCCGAAGCCTCTTGTTGATTTTGCTAACAAGCCAATGATCCTGCATCAGATAGAGGCTCTTAAGGCCATTGGAGTTAATGAAGTGGTACTTGCTATCAATTACCAACCAGAAGTGATGTTGAATTTCTTGAAGGATTTTGAGGCAAAGCTCGGCATCAAAATCACTTGTTCTCAAGAAACTGAACCACTGGGGACTGCAGGTCCATTGGCTCTTGCCAGGGACAAGCTGATTGATGACTCTGGTGAGCCATTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTATCCACTTAAAGAAATGATTGAATTCCACAAAGCCCATGGAGGAGAGGCTTCCATAATGGTGACAAAGGTCGATGAGCCATCAAAATATGGTGTGGTTGTGATGGAGGAGACTACCGGTCAGGTTGAGAAATTTGTGGAAAAACCAAAGCTGTTTGTTGGTAACAAAATCAATGCTGGAATATACCTATTGAACCCCTCAGTTTTGGATCGAATTGAACTGAGGCCCACTTCTATCGAGAAAGAGGTGTTTCCAAAGGTTGCAGCAGAGAAAAAGCTATATGCAATGGTCCTGCCAGGATTCTGGATGGACATTGGACAACCAAGGGACTATATTTCTGGCCTGACACTCTACCTGGACTCACTGAGGAAAAATAGTCCTTCTAAGTTGGCCAGTGGCCCTCACATTTTGGGGAATGTCATTGTGCATGAGACTGCCAAAATTGGTGAGGGATGTCTCATTGGACCTGATGTTGCAATTGGTCCTGGCTGTATTGTTGAGTCAGGTGTCAGGCTTTCACGCTGCACAGTAATGCGAGGAGTTCGGATTAAAAGCCATGCTTGCATATCCAGCAGTATCATTGGGTGGCATTCTACTGTTGGACAATGGGCTCGTGTGGAGAATATGACAATCCTGGGAGAAGATGTCCATGTATGTGATGAAATTTACAGCAATGGTGGTGTAGTTTTGCCCCACAAGGAGATCAAGTCAAGCATTCTGAAGCCAGAGATAGTCATGTGA 1086 0.4457 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVNEVVLAINYQPEVMLNFLKDFEAKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKVAAEKKLYAMVLPGFWMDIGQPRDYISGLTLYLDSLRKNSPSKLASGPHILGNVIVHETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKSHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02233 361 FunFam mannose-1-phosphate guanyltransferase beta 1 232 - -
Seca6g02233 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 231 IPR029044 -
Seca6g02233 361 Gene3D Hexapeptide repeat proteins 238 356 - -
Seca6g02233 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058
Seca6g02233 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 360 - -
Seca6g02233 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Seca6g02233 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
Seca6g02233 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 295 IPR001451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02233 Seca-Chr6 83259770 83264579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02233 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 23.116 1.18e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02233 K00966 - gmx:100818016 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02233 6 83259770 83264579 Seca6g02233 6 83259770 83264579 ECH
Seca8g01008 8 14089816 14094372 Seca6g02233 6 83259770 83264579 PCT