Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02229 ATGGCTCCTAATTCAGATATCAATCATCTTTCTCACCCTTGCATATATGGGGATTTTGTTTCTTCATACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAAATTGGGTCCAGTAGAGGAAGAAGTGGTGGTCGTAATCTACAGCAACCTGCGGAGGAAAACATGGTTTGGCGAGCTCCAGCTAAATCATTGGGTGACCGTGCTAGATTTCAGAAGGAGGAAGATGATCTGAACCATGCAATGACACTTCCATTAGGCGAAGGTATAAAGAGACCAACTGGATACAGATGGCGGACAGGAACTGAAGAAGACTATGATAAGGCCCTTCAGGATCGCATGCACTCATCTGCATACCCTCCATATGCCCCTTTACCTTTTTATCCCCGGGGATATGGTATGCCATCACATATCAGAATATGTGGAGGATGCAACCAGGAGATAGTGTACGGCAATTGTTTGGGAGTTGAGAATAGCTATTTTCATCCAGACTGTTTTCGGTGTCACTCTTGTCATTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAATTAACCCACCCTAAATGTGAAGTTTGCCATCAATATATACCAATAAATTCTGCTGGTTTAATTGAGTATAGGTGTCACCCCTATTGGAACCAAAAGTATTGTCCATCTCATGAGTATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTAGAGGTACTAATGTCTCGGGGTGAAAGATACTATAGATTGGATGATGGAAGGATTTTGTGCTTTGAATGTATGGAATCTGCTATAACGGATACTGGTGAATGTCAGCCTCTTTATCATGCCATCAGAGACTATTATGAAGGAATGAATATGAGAATAGATCAACAAGTCCCCATGCTTCTTGTTGGGAGAGAAGCACTTAATGAAGCTATTGTTGGGGAGAAGAATGTAATGAACCATGGCTTCCATCACTTGCCAGAAACAAGGGGCTTATGCCTTTCAGAAGAGCAGACTGTCACCAGTGTACATAGATGGCCAATAATTGGAGGCCATCGATTAATAGGGATGAGAACTCAACCTCATAGGCTGACTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCAAGGTTACTCACAGGTGCTATCCTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTACCGCAACCTTGACCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGATGCAGAAGTGATGGCAGGTTCTAGAACCATGCCATCAACATCAGCAGCTTCTTCTTCATCCTCCTCCTCTTCCTCCCACTCATCAAAGAAAGGTGTGAAATCTAAAGTTGAAAATAAGCTGGGTGAATTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGAGGGTTTAGAGCAGCTAATGCAGCTGTGAATAAATATGGTTTACGTTGTACTCTGGAGCATATTCGTTTGACTGGTCAGTTCCCACTGTAA 1557 0.4232 MAPNSDINHLSHPCIYGDFVSSYSERKSGFMKWFGKIFKIGSSRGRSGGRNLQQPAEENMVWRAPAKSLGDRARFQKEEDDLNHAMTLPLGEGIKRPTGYRWRTGTEEDYDKALQDRMHSSAYPPYAPLPFYPRGYGMPSHIRICGGCNQEIVYGNCLGVENSYFHPDCFRCHSCHYPITEREFSLSGKHPYHKSCFKELTHPKCEVCHQYIPINSAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLEVLMSRGERYYRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQVPMLLVGREALNEAIVGEKNVMNHGFHHLPETRGLCLSEEQTVTSVHRWPIIGGHRLIGMRTQPHRLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLDPEVEEGICQVLSYMWLDAEVMAGSRTMPSTSAASSSSSSSSSHSSKKGVKSKVENKLGEFFMNQIANDSSPAYGGGFRAANAAVNKYGLRCTLEHIRLTGQFPL. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02229 518 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Seca6g02229 518 Pfam LIM domain 145 198 IPR001781 -
Seca6g02229 518 CDD LIM 172 236 - -
Seca6g02229 518 MobiDBLite consensus disorder prediction 441 460 - -
Seca6g02229 518 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 140 170 - -
Seca6g02229 518 Gene3D Cysteine Rich Protein 141 204 - -
Seca6g02229 518 SMART lim_4 144 196 IPR001781 -
Seca6g02229 518 PANTHER PROTEIN DA1-RELATED 2 33 517 IPR045218 -
Seca6g02229 518 CDD LIM_DA1 145 197 - -
Seca6g02229 518 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Seca6g02229 518 MobiDBLite consensus disorder prediction 441 463 - -
Seca6g02229 518 Pfam Protein DA1 297 513 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02229 Seca-Chr6 83179722 83185780 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca6g02229 DA1-like 7.3e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02229 - - gmx:100793901 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02229 6 83179722 83185780 Seca6g02229 6 83179722 83185780 ECH