Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02219 ATGGGTTGTATTACTAAATCAAGAACAAATGGTATGATGATTGGTCAGGAGTTCCTTTGCTCAAAGGAGGGGTTTCGAAAAAGAAATGGAGAAAAGGTAAATGGAAGTGTTTCAACACGTGATAAAACAAGGGTAGGATGCAAGGCAATGATTTATATAAAGAAAAATGAAGATGAATGGATTATTTCTGGATTTATAAGAGGTTATAATCACAAACTTTTTTCCCCAAGAAGTTCAAAGTTTCTTCGAGTACATAAAAAGAAAACTAGAGTGCAAAAAAGACTTATCGATGTGCTCGATGACTCTGGTCTGCACCCTAGAAAAATAGCATTTGTGTTGTGTACTGAAAGTGGTGGTATTGATAATGTTGGATTTAGCCAACAAGATGTTATCAATTACTTAAGTGAAAAGAGACAGAAGCAATTACAAAAAGGAGATGCCCAGTTGATGTTATCATATTTTAAGAATTGTCAATTGAAGAATACTGGATTTTTCTATGCATTTCAAATGGATGCAGAAGGACAGTTAGCAAATTGTTTTTGGGTTGATTCAAGTGATTTCAAAAATAAATTTTACAAGTGCATTCATCAATCTATCACTATTGAAGAATTTGAATCTGATTGGGAAGCAATGGTAGATACATATGGATTGCAAGATAATCAGTGGCTACAGAAAATTTACTTAATTAGAGAAAAATGGATTCCTGCTTATGTACGTCACAATTTTTGTGCTGGAATGTCCACCACCCAAAGAAGTGAAAGTATGAATAAGTTCTTTAAGGATTTTTTGAATTTAAGTACTTCATTGAGCAAGTTTGTAACACAGTATAAGAAGGCTCTCGATGCACGTTATAACAATGAAAGAAAGAAGACTTTCAAGACAATGAATTCAAAACCATTTTTGAGAACTTTATATCCCATGGAAGAAGAAGCATCGAAAAGTTATACAAGAAAGGTGTTTACGATATTTCAAGATGAAATGGTTGGCTCTCAAAACTTTACCGCAGAAAAAATTGGATTTTCCACTGATGTATCCACATACAAGGTTCATGAAATATACAAAGAGAGGCCTACCTATTATGTGACTTTTCATGTTAATTTAAAAGAAGCAAATTGTAGTTGTCATATGTTTGAATTTGTGGGCATTCTTTGTAGACATGTGCTAGTTGTTTTTATAAAGAAAAGGTTCACTCTCTCCCTTTGCAATATATTCTACCTCGATGGACCATTAATGTTAAGAAGGAGAAAGTCAAAGGATTCACAAGTGAAGAATTCCATGAGGAAAACAACAAAACTTCTAGTACTTTGTTGTTTAATAGTGTTATGGCCCATTCCCTTGAACTGTCTGAAAGAGCTTCTCGATCAGAAAAGCATCATGATGTTGCAATTCGAGGTTTACAAAAGTTAA 1407 0.3348 MGCITKSRTNGMMIGQEFLCSKEGFRKRNGEKVNGSVSTRDKTRVGCKAMIYIKKNEDEWIISGFIRGYNHKLFSPRSSKFLRVHKKKTRVQKRLIDVLDDSGLHPRKIAFVLCTESGGIDNVGFSQQDVINYLSEKRQKQLQKGDAQLMLSYFKNCQLKNTGFFYAFQMDAEGQLANCFWVDSSDFKNKFYKCIHQSITIEEFESDWEAMVDTYGLQDNQWLQKIYLIREKWIPAYVRHNFCAGMSTTQRSESMNKFFKDFLNLSTSLSKFVTQYKKALDARYNNERKKTFKTMNSKPFLRTLYPMEEEASKSYTRKVFTIFQDEMVGSQNFTAEKIGFSTDVSTYKVHEIYKERPTYYVTFHVNLKEANCSCHMFEFVGILCRHVLVVFIKKRFTLSLCNIFYLDGPLMLRRRKSKDSQVKNSMRKTTKLLVLCCLIVLWPIPLNCLKELLDQKSIMMLQFEVYKS. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02219 468 ProSiteProfiles Zinc finger SWIM-type profile. 359 395 IPR007527 GO:0008270
Seca6g02219 468 Pfam SWIM zinc finger 363 393 IPR007527 GO:0008270
Seca6g02219 468 Pfam FAR1 DNA-binding domain 5 74 IPR004330 -
Seca6g02219 468 PANTHER OS01G0519700 PROTEIN 12 184 - -
Seca6g02219 468 SMART 26again6 370 397 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02219 Seca-Chr6 82989481 82991246 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g02219 FAR1 1.3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02219 - - ini:109174063 468.003