Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02177 ATGTCGATTGCAGAGGACAAGTCTCAGTCTCACGTTGTTGTTGTTGTCGTCGGTGACATTGACAATGGCAATGGTTGTCCTCGGAGCATTGTCAGCGGCGAAGGGAGTTCGGAGACCGGTGAGCGGTTAGATGAGGAACAAAGGTGTTGTTCCAAGGAGTGTGGTCCTGAGATTGTGGGTGTGTCCGAAAAACAGAGGAGATCCTCTGTTTCTGAGTGTTGTGTGGATGTGGATCTGGACAATGCTGTGCCTGATGACAAGGTACATTTGGCTAAAGTGGAGAGGGATTGCAGGATTTGCCATCTCAGCATGGATATGACCAACCATGACCATGAATCTGGGACTCCCATTGAACTTGGATGTTCTTGCAAAGATGATTTAGCTGCTGCTCACAAACACTGTGCTGAGGCTTGGTTCAAGATCAAGGGTAACAAAACTTGTGAAATATGTGGATCCATTGCACACAATGTAGCTGGTGTAATTGAAGCTGAGATGACAGAACAGTGGAATGAAACAAATGATGCCTCCAATGTACCACCAACTGGACCAGCTCCCCCTGCAGAAACTAGGAGTTTCTGGCAGGGTCACCGGTTCTTGAATTTCCTTCTTGCCTGTATGGTATTTGCCTTTGTCATATCATGGCTTTTTCACTTCAATGTGCCCTCATGA 669 0.4694 MSIAEDKSQSHVVVVVVGDIDNGNGCPRSIVSGEGSSETGERLDEEQRCCSKECGPEIVGVSEKQRRSSVSECCVDVDLDNAVPDDKVHLAKVERDCRICHLSMDMTNHDHESGTPIELGCSCKDDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGVIEAEMTEQWNETNDASNVPPTGPAPPAETRSFWQGHRFLNFLLACMVFAFVISWLFHFNVPS. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02177 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 158 IPR013083 -
Seca6g02177 222 PANTHER ZINC FINGER, RING-CH-TYPE 34 221 - -
Seca6g02177 222 SUPERFAMILY RING/U-box 94 153 - -
Seca6g02177 222 ProSiteProfiles Zinc finger RING-CH-type profile. 89 157 IPR011016 GO:0008270
Seca6g02177 222 SMART ringv_2 96 151 IPR011016 GO:0008270
Seca6g02177 222 Pfam RING-variant domain 97 150 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02177 Seca-Chr6 82286702 82289398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02177 61 222 C3H Transcription Factor Family AT5G05830 65.644 1.55e-74 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02177 - - gmx:100818979 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01704 2 31792279 31795661 Seca6g02177 6 82286702 82289398 ECH
Seca6g02177 6 82286702 82289398 Seca6g02177 6 82286702 82289398 ECH