Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02168 ATGGAATTTGAAAGTCTGTATCCACCAAATCGGTTTGATGAAGAGATGTACAGCACAGAATGTACTAGTGAAGAGAACATTGTCCTTGATGTGATGAAGCACTATGATGAATTTGTAGAAGAAATGACTCAGATAGAAGCTGCAGCAGTTCCTGGATATCCCACCTCTTCTTTCTGCATTGAGATGGTTGACAACCTGCAGGGTCATGATGGATGCAAAAAGAGTCCTGCAACCGCCAAAGGTTCTGATCAGGAGAGGAAGAAAGTGGTTCGTTGGACAAAAGAGGAGCATGAACGCTTTCTGATGGGACTTAAGAACTATGGCAAAGGGCACTGGAAAAATATCGCTCGCTATTCTGTAATCACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACCTCAAAAGGCAAAAGCTTTCTGGAGGGAAAGATAATAAAAGGAGGTCTAGTATCCATGATATCACCACTGATAATCTTACAGAACCTACAACTAATTCAGGTCAAGACAAGCCTATTTTGTTCAATGAGTCTCTCATGCCAATTGTGCAACCAGAAGGGATTAATCACCTCAATGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCACAATGTGGAGCCAATCATGGAGGTTTTCAATCCAAATTATGATGAAATGTTCATGTTTACCTCATCTGATATCTATTCTGAGACCCTCAAATTTCAAGGTCAGCAGGATCTAGACAAATGTCTTTTTCATCATGCTTATGCCCAACAAAATGCTCAAGGTTTCGGAACCACTTCTAATGACTTCAATAAGGACGTTGTTTTTGGTTTTTGGTGA 873 0.4089 MEFESLYPPNRFDEEMYSTECTSEENIVLDVMKHYDEFVEEMTQIEAAAVPGYPTSSFCIEMVDNLQGHDGCKKSPATAKGSDQERKKVVRWTKEEHERFLMGLKNYGKGHWKNIARYSVITKTPTQVASHAQKYLKRQKLSGGKDNKRRSSIHDITTDNLTEPTTNSGQDKPILFNESLMPIVQPEGINHLNEEPLMEVFNPNYESLMTNVQPEGINHHNVEPIMEVFNPNYDEMFMFTSSDIYSETLKFQGQQDLDKCLFHHAYAQQNAQGFGTTSNDFNKDVVFGFW. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02168 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 87 138 IPR006447 GO:0003677
Seca6g02168 290 SUPERFAMILY Homeodomain-like 86 140 IPR009057 -
Seca6g02168 290 CDD SANT 91 136 IPR001005 -
Seca6g02168 290 MobiDBLite consensus disorder prediction 139 156 - -
Seca6g02168 290 ProSiteProfiles Myb-like domain profile. 84 136 IPR001005 -
Seca6g02168 290 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 26 213 IPR043363 -
Seca6g02168 290 SMART sant 88 138 IPR001005 -
Seca6g02168 290 MobiDBLite consensus disorder prediction 138 172 - -
Seca6g02168 290 Gene3D - 90 141 - -
Seca6g02168 290 MobiDBLite consensus disorder prediction 157 172 - -
Seca6g02168 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 140 IPR017930 -
Seca6g02168 290 Pfam Myb-like DNA-binding domain 91 136 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02168 Seca-Chr6 82065319 82066469 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca6g02168 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02168 - - gmx:100783469 248.825