Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g02154 | ATGGATCTTGAGACTCTGTATCGATCTTGTTTTGCATCAAATTCAAATTGGTTTGTTGAAGAGATGCACAACACAGAATGGACTAGAGAAGAGGACAAACAATTTGAAAGTGCCATTGCCAAGTGTGATAATAATACCCCCGATTGGGAAATGGTGGCAGCCATGATCCCTAGGAAAACTGTCCTTGATGTGATGAAGCACTATGAGAAATTTGTAGAAGATATGGCTGAAATAGAAGCAGGTCGGGTTCCAATTCCTGTATATCTCACGGGGACGGTTGAGGGTCATGATGGATGCAAAAAGAGGCATGCAACTTCCATGGGTACTTCTCATCAGGACAGGAAGAAAGGGGTTCCATGGACAGCAGAGGAGCACAAACGTTTTTTGATGGGACTTGACAAGTATGGCAAAGGGGATTGGAGAAATATTGCTCGCCATTCTGTAATCACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTTTATTAGGCAAAAGCTTTCTAGAGGGAAAAATAATAAAAGGAGGTCTAGTATATATGATATCACCACTGATAATCTTACAGAACCTACAACTAATTCAGGTCAAAACAAGCCTCTTTTGTTCAATGAGTCTCACATGTCAAATGTGCAACCAGAAGGGATTAATCACCACAATGAAGAGCCACTCATGGAGGCTCTCAACCCAAATTATGATGATATGTTCATGTCTCCCTCATCTGACATCTATTCCGAGACCCTCAACTTTCAAGGTCAGCAGGATCTATACGAATGTCTTTTTCATCATGCTCATGCCCAGCAAAATGCTCAAGGTTTCAGAACTGCTTCTAATGACGTCAATAAGGACTCTGTTTTGGATACTATATATGCACTGTGA | 882 | 0.415 | MDLETLYRSCFASNSNWFVEEMHNTEWTREEDKQFESAIAKCDNNTPDWEMVAAMIPRKTVLDVMKHYEKFVEDMAEIEAGRVPIPVYLTGTVEGHDGCKKRHATSMGTSHQDRKKGVPWTAEEHKRFLMGLDKYGKGDWRNIARHSVITKTPTQVASHAQKYFIRQKLSRGKNNKRRSSIYDITTDNLTEPTTNSGQNKPLLFNESHMSNVQPEGINHHNEEPLMEALNPNYDDMFMSPSSDIYSETLNFQGQQDLYECLFHHAHAQQNAQGFRTASNDVNKDSVLDTIYAL. | 294 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g02154 | 293 | Gene3D | - | 118 | 169 | - | - | |
| Seca6g02154 | 293 | CDD | SANT | 26 | 72 | IPR001005 | - | |
| Seca6g02154 | 293 | SUPERFAMILY | Homeodomain-like | 26 | 79 | IPR009057 | - | |
| Seca6g02154 | 293 | Gene3D | - | 19 | 85 | - | - | |
| Seca6g02154 | 293 | ProSiteProfiles | Myb-like domain profile. | 112 | 164 | IPR001005 | - | |
| Seca6g02154 | 293 | SMART | sant | 23 | 74 | IPR001005 | - | |
| Seca6g02154 | 293 | SMART | sant | 116 | 166 | IPR001005 | - | |
| Seca6g02154 | 293 | Pfam | Myb-like DNA-binding domain | 119 | 164 | IPR001005 | - | |
| Seca6g02154 | 293 | Pfam | Myb-like DNA-binding domain | 26 | 70 | IPR001005 | - | |
| Seca6g02154 | 293 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 115 | 167 | IPR006447 | GO:0003677 | |
| Seca6g02154 | 293 | CDD | SANT | 119 | 164 | IPR001005 | - | |
| Seca6g02154 | 293 | ProSiteProfiles | Myb-like domain profile. | 19 | 72 | IPR001005 | - | |
| Seca6g02154 | 293 | FunFam | transcription factor MYB1R1 | 118 | 169 | - | - | |
| Seca6g02154 | 293 | ProSiteProfiles | SANT domain profile. | 120 | 168 | IPR017884 | - | |
| Seca6g02154 | 293 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 22 | 263 | IPR043363 | - | |
| Seca6g02154 | 293 | FunFam | Transcription factor SRM1 | 19 | 85 | - | - | |
| Seca6g02154 | 293 | SUPERFAMILY | Homeodomain-like | 114 | 168 | IPR009057 | - | |
| Seca6g02154 | 293 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 112 | 168 | IPR017930 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g02154 | Seca-Chr6 | 81843575 | 81845304 | Dispersed/Proximal |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Seca6g02154 | Myb_DNA-binding | 1.7e-11 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g02154 | - | - | gmx:100783469 | 325.479 |