Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02150 ATGGATCTTGAGACTCTGTATCGATCTTGTTTTGCGTCAAATTCAAATTGGTTTGTTGAAGAGATGCACAACACAGAATGGACTAGAGAAGAGGACAAACAATTTGAAAGTGCCATTGCCAAGTGTGATAATAATACCCCCGATTGGGAAGTGGTGGCAGCCATGATCCCTAGGAAAACTGTCCTTGATGTGATGAAGCACTATGAGAAATTTGTAGAAGATATGGCTGAAATAGAAGCAGGCCGGGTTCCAATTCCTGTATATCTCACGGGGACGGTTGAGGGTCATGATGGATGCAAAAAGAGGCATGCAACTTCCATGGGTACTTCTCATCAGGACAGGAAGAAAGGGGTTCCATGGACAGCAGAGGAGCACAAACGTTTTTTGATGGGACTTGACAAGTATGGCAAAGGGGATTGGAGAAATATTGCTCGCCATTCTGTAATCACAAAGACTCCTACCCAAGTGGCAAGTCATGCTCAAAAGTACTTTATTAGGCAAGAGCTTTCTAGAGGGAAAGATAATAAAAGGAGGTCTAGTATCCATGATATCACCACTGATAATCTTACAGAACCTACAACTAACTCAGGTCAAAACAAGCCTCTTTTGTTCAATGAGTCTCACATGCCAAATGTGCAACCAGAAGGGATTAATCACCACAATGAAGAGCCACTCATGGAGGCTCTCAACCCAAATTATGATGATATGTTCATGTCTCCCTCATCTGACATCTATTCCGAGACCCTCAAGTTTCAAGGTCAGTAG 765 0.4288 MDLETLYRSCFASNSNWFVEEMHNTEWTREEDKQFESAIAKCDNNTPDWEVVAAMIPRKTVLDVMKHYEKFVEDMAEIEAGRVPIPVYLTGTVEGHDGCKKRHATSMGTSHQDRKKGVPWTAEEHKRFLMGLDKYGKGDWRNIARHSVITKTPTQVASHAQKYFIRQELSRGKDNKRRSSIHDITTDNLTEPTTNSGQNKPLLFNESHMPNVQPEGINHHNEEPLMEALNPNYDDMFMSPSSDIYSETLKFQGQ. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02150 254 FunFam transcription factor MYB1R1 118 169 - -
Seca6g02150 254 SUPERFAMILY Homeodomain-like 114 168 IPR009057 -
Seca6g02150 254 CDD SANT 26 72 IPR001005 -
Seca6g02150 254 MobiDBLite consensus disorder prediction 170 184 - -
Seca6g02150 254 FunFam Transcription factor SRM1 19 85 - -
Seca6g02150 254 ProSiteProfiles Myb-like domain profile. 112 164 IPR001005 -
Seca6g02150 254 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Seca6g02150 254 Gene3D - 19 85 - -
Seca6g02150 254 Gene3D - 118 169 - -
Seca6g02150 254 CDD SANT 119 164 IPR001005 -
Seca6g02150 254 SMART sant 23 74 IPR001005 -
Seca6g02150 254 SMART sant 116 166 IPR001005 -
Seca6g02150 254 Pfam Myb-like DNA-binding domain 119 164 IPR001005 -
Seca6g02150 254 Pfam Myb-like DNA-binding domain 26 70 IPR001005 -
Seca6g02150 254 MobiDBLite consensus disorder prediction 170 200 - -
Seca6g02150 254 ProSiteProfiles Myb-like domain profile. 19 72 IPR001005 -
Seca6g02150 254 ProSiteProfiles SANT domain profile. 120 168 IPR017884 -
Seca6g02150 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 168 IPR017930 -
Seca6g02150 254 NCBIfam myb-like DNA-binding domain, SHAQKYF class 115 167 IPR006447 GO:0003677
Seca6g02150 254 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 234 IPR043363 -
Seca6g02150 254 MobiDBLite consensus disorder prediction 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02150 Seca-Chr6 81674552 81676289 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g02150 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02150 - - gmx:100783469 301.597