Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02144 ATGTCTTCTGCTTCTTCTTGTGCACTCACTATCATCCAAAAATGCACTGTTTCCCCTCATCAGAAATCCACTTTGGGAAACCTCAAGCTCTCTATCTCAGACCTTAACATGCTTTGCTGTCACTACATCCAAAAGGGTTGTCTCTTCACCACACCATCACTTCCCTCTCACACTCTCATCCCCCACCTCCTCACCTCTCTCTCTCGCACCCTCTCTCTTTTCCCCCCACTCGCTGGCCGCTTCATAACCGACTCCGACGGTTACATCTACATCACATGCAACGACGCCGGTGTCAATTTCATCCACGCCGCCGCCACCGACCTCACCATCGCCGACCTCTTGTCCCCACCCGATGTCCCTCAATTCCTCATCAAGGAACTCTTCCCTTTCCATCGCAAAATCAACTACACTGCGCATTCCTCCCCTATCATGGCCGTTCAGGTCACCGATCTCGCCGACGGAATCTTCATCGGCTGCGCTGTCTGCCACGCCGTCATCGACGGAACCTCCCTCTGGAACTTCTTCAATACCTTTGCTGAAGTTTCCAGGGGAGTCACGCCTGCCTCCAATGTCCCGGACTTCCGCCGAGAATCGATTCTGGTCTCCAAGGTCGCGCTCCGGTTGCCGGAAGGTGAACTCAAGGTGAAGTTCAACGCCGACGAGCCCTTGCGTGAAAGGATTTTCAGCTTCAGCCGCGAATCAATTCAGAAGCTGAAAGCCAGAGTGAACCACCGGACATTTCCGGAGAACGTCGACAACACCGTTGAGTTGGTGGGGAAGATGAGCAACGATCCTCAACAGAAAACAGTTACGAGCAACGAAACGGTTACGGAAAAAGTAACCGTCCAAACGACAGAGATTTCGTCGTTTCAGTCACTGTGCGCGCTGACGTGGCGCTGCGTGACGCGTGCGAGGAACTTAGAGGGATCGAAAACGACGACGTTTAGAATGGCGGTGAATGTTAGGCAGCGTTTGGAGCCAAAGTTGGGAGAGTACTACTTCGGGAACGCGATTCAGAGCATCGCCACATGTGCTGCCGTTGGAGACGTGGTGTGTGGGGATTTGCGGTGGTGCGCGGAGGAGCTGAACAAGAACGTGAAGGCGTATGATAGCTCTATGGTGCGGCGCGTTGTAGAGAACTGGGAGCGCGAGCCGAAGATCTTCGAGCTGGGGAACCACGACGGTGCAACGTTGCAGATAGGAAGCTCGCCGAGATTCCCAATGTATGACAATGATTTTGGATGGGGGAAGCCCTTGGCGGTGCGGAGCGGCAGAGCCAACAAGTTTGATGGGAAGATCTCGGCGTTCCCGGGAAGGAAAGGCGGCGGAGCCGTCGATTTGGAGATGGTTTTGGCGCCGCAAACGATGGCGCGGCTCGAGTCTGACCCTGAGTTCATGCTTTTTGCGTCTGCTCAGGCATGA 1422 0.5457 MSSASSCALTIIQKCTVSPHQKSTLGNLKLSISDLNMLCCHYIQKGCLFTTPSLPSHTLIPHLLTSLSRTLSLFPPLAGRFITDSDGYIYITCNDAGVNFIHAAATDLTIADLLSPPDVPQFLIKELFPFHRKINYTAHSSPIMAVQVTDLADGIFIGCAVCHAVIDGTSLWNFFNTFAEVSRGVTPASNVPDFRRESILVSKVALRLPEGELKVKFNADEPLRERIFSFSRESIQKLKARVNHRTFPENVDNTVELVGKMSNDPQQKTVTSNETVTEKVTVQTTEISSFQSLCALTWRCVTRARNLEGSKTTTFRMAVNVRQRLEPKLGEYYFGNAIQSIATCAAVGDVVCGDLRWCAEELNKNVKAYDSSMVRRVVENWEREPKIFELGNHDGATLQIGSSPRFPMYDNDFGWGKPLAVRSGRANKFDGKISAFPGRKGGGAVDLEMVLAPQTMARLESDPEFMLFASAQA. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02144 473 Pfam Transferase family 9 466 - -
Seca6g02144 473 SUPERFAMILY CoA-dependent acyltransferases 49 184 - -
Seca6g02144 473 Gene3D - 209 461 IPR023213 -
Seca6g02144 473 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 11 466 - -
Seca6g02144 473 Gene3D - 9 207 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02144 Seca-Chr6 81590789 81592210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02144 9 460 Monolignol Biosynthesis Gene Families AT5G48930 27.115 5.36e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02144 - - cam:101506439 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02144 6 81590789 81592210 Seca6g02144 6 81590789 81592210 ECH
Seca8g00938 8 12712189 12713652 Seca6g02144 6 81590789 81592210 PCT