Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02143 ATGGATGTTATAAAGACGCAGCAAATCTCATCTCGACCGATCGAGAAAGTGGTGGTTCACCCGCTAGTGTTGCTCAGTATCGTCGACAACTACAACAGGGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGTGTCTTGCTCGGTTCCACTTTCAAAGGCACCGTCGACGTTTCCAACAGCTACGCCGTTCCCTTTGAAGAAGATGACAAGGACCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCAATGTTTTCCATGTTCAAAAGAATAAACGCAAAGGAACATGTTGTCGGGTGGTATAGCACTGGTCCAAAACTGCGTGAAAATGACCTCGACATTCATGGGTTATTTAATGAGTACGTTTATCGAACTGATATCCTCTATGTTCCAAATCCTGTTTTGGTTATAATTGATGTTGAACCTAAGGAGTTGGGAATTCCAACAAAAGCATACTACGCCGTTGAAGAGGTTAAAGAGAATGCCACTCACAAAAGCCAAAAGGTCTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACACTTGCTTAGGGATGTGAAGGATACGACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTCACAGCCTTGAAGGGTTTGGATGCAAGACTTAAAGAGATAAGGAGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTACCATCTGCAGGACGTGTTCAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAGTGAAAACCAATGATATGATGCTGGTAATATACCTGTCGTCCCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGAGCAGAAGACTCCAAATCAGTAGCAGTGCCAAGTGCAGCTGTATAA 954 0.4371 MDVIKTQQISSRPIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSTFKGTVDVSNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNEYVYRTDILYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATHKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVAVPSAAV. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02143 317 CDD MPN_RPN7_8 15 303 IPR033858 GO:0005838
Seca6g02143 317 ProSiteProfiles MPN domain profile. 17 162 IPR037518 -
Seca6g02143 317 SMART pad1_6 16 158 IPR000555 GO:0005515|GO:0008233|GO:0008237
Seca6g02143 317 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 13 298 - -
Seca6g02143 317 Pfam Maintenance of mitochondrial structure and function 182 293 IPR024969 -
Seca6g02143 317 Gene3D Cytidine Deaminase, domain 2 9 202 - -
Seca6g02143 317 FunFam 26S proteasome non-ATPase regulatory subunit 7 9 202 - -
Seca6g02143 317 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 122 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02143 Seca-Chr6 81568049 81572016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02143 19 256 Eukaryotic Initiation Factors Gene Family AT2G39990 28.099 7.72e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02143 K03038 - gmx:100790393 589.341