Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02142 ATGGATGAGGACATGTCAGGCTTTTGCATTAGAAGTGGAAGTGTTCGTGGTAACAATAGTGCAAGTACCGGCACTAAGTGTGGGCGTTGGAACCCCACAACTGAACAAGTTAAGCTTTTAACTGAACTGTTCAGTTCTGGACTCTGTACTCCAAGCACTGATCAGATTCAAAAGATCTCTACTCAGTTGAGTTTTTATGGTAAGATTGAGAGCAAGAATGTCTTCTATTGGTGTCAGAATCATAAGGCTAGGGAAAGACAAAAACGTCGTAAGGTTTCCTTTGATGATAATAAGGATGTGATTCGTAGAGAAAATTCCAACTCCAAGTCCATCAATTCTTCTTCACAAACAGATTTTGCAAAGCTCTATCAGGTTTCAGAGCCAGAGAGGGTGATTGAGACTCTTCAACTCTTCCCTTTGAACTCCTTTGGTGAATCAGAATCAAAGAATTTTAGAGTCCATGCAAATGAATGCAGGGATAATACAATGTTTTCATACACAATGGGGGAACAAATGGATCACCCTCCATTAGATCTTCGCTTGAGTTTTCTGTGA 555 0.4018 MDEDMSGFCIRSGSVRGNNSASTGTKCGRWNPTTEQVKLLTELFSSGLCTPSTDQIQKISTQLSFYGKIESKNVFYWCQNHKARERQKRRKVSFDDNKDVIRRENSNSKSINSSSQTDFAKLYQVSEPERVIETLQLFPLNSFGESESKNFRVHANECRDNTMFSYTMGEQMDHPPLDLRLSFL. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02142 184 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 14 108 IPR044555 GO:0003700|GO:0099402
Seca6g02142 184 Pfam Homeodomain 27 87 IPR001356 GO:0003677
Seca6g02142 184 Gene3D - 26 94 - -
Seca6g02142 184 ProSiteProfiles 'Homeobox' domain profile. 23 88 IPR001356 GO:0003677
Seca6g02142 184 SUPERFAMILY Homeodomain-like 28 90 IPR009057 -
Seca6g02142 184 FunFam WUSCHEL-related homeobox 11 26 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02142 Seca-Chr6 81563081 81564311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02142 8 184 Wox Gene Family AT3G11260 55.026 2.61e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca6g02142 Homeodomain 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02142 - - pvu:PHAVU_008G226100g 275.404