Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02137 ATGGCCACTTTTCTGTTCCTCTACATCACTATCTTGACGGTTATGGGCGTTAACAGATCCCCTACCAAGTGCCAATCTGTTGGTATTCAAGGAATCGCTTGGGCTTTTGGTGGCATGATCTTCGCTCTCGTCTACTGCACCGCTGGCATCTCTGGGGGTCACATTAACCCGGCTGTGACATTCGGTCTGTTTTTGGCGAGGAAATTGTCGTTGACCAGGGCTCTGTTCTACATGGTGATGCAAGTCCTTGGTGCTATCTGTGGTGCTGGTGTGGTCAAGGGTTTCGAGGGAAAGACCTTGTATGGAAAATACAACGGTGGTGCTAACTTCGTCGCCCCTGGTTACACCAAAGGTGACGGACTTGGTGCTGAGATTGTTGGCACCTTCATTCTTGTCTACACCGTTTTCTCAGCCACAGATGCCAAGCGTAGTGCCAGAGACTCTCACGTCCCTATTTTGGCACCCTTGCCAATTGGATTCGCTGTGTTCTTGGTTCACTTGGCCACTATCCCAATCACTGGAACCGGTATTAACCCTGCTAGAAGTCTCGGTGCTGCCATTATCTTCAACAAAGACCTTGGCTGGGATGATCACTGGATTTTCTGGGTTGGACCTTTCATTGGAGCAGCTCTTGCAGCGCTTTACCACCAAGTTGTGATCAGAGCCATTCCTTTCAAATCCAGTTAA 687 0.4949 MATFLFLYITILTVMGVNRSPTKCQSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQVLGAICGAGVVKGFEGKTLYGKYNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSS. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02137 228 Pfam Major intrinsic protein 1 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g02137 228 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 225 IPR034294 -
Seca6g02137 228 NCBIfam MIP family channel protein 1 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g02137 228 ProSitePatterns MIP family signature. 54 62 IPR022357 -
Seca6g02137 228 SUPERFAMILY Aquaporin-like 1 221 IPR023271 -
Seca6g02137 228 Gene3D Glycerol uptake facilitator protein. 1 227 IPR023271 -
Seca6g02137 228 PRINTS Major intrinsic protein family signature 199 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g02137 228 PRINTS Major intrinsic protein family signature 36 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g02137 228 PRINTS Major intrinsic protein family signature 159 181 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g02137 228 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g02137 228 PRINTS Major intrinsic protein family signature 123 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g02137 228 FunFam Probable aquaporin PIP1-2 1 228 - -
Seca6g02137 228 CDD MIP 1 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02137 Seca-Chr6 81536889 81538002 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02137 1 228 Major Intrinsic Protein MIP AT4G23400 88.158 2.04e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02137 K09872 - gmx:100791447 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02137 6 81536889 81538002 Seca6g02137 6 81536889 81538002 ECH
Seca8g00930 8 12590905 12592481 Seca6g02137 6 81536889 81538002 PCT