Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02100 ATGGCTTCCAGAGGCACTGGAACATTGATTTTTGCGTGTCTGTTATGGCTTTTCTTCCTGTGCGCAACCATTGCATTCTTTCAGATCATTATGGTAGAGAATGAAAGCGACCATGTTTCCTCCTCTCAGAACAAGTTCATCACAGCTCAACATCATCACCCAGATGCCCCATTGGAAGAGGGTTTGGAGGCTGTGACCCACAAAGTGTATTTTGATGTAGAGATCGATGGAAAATTACTGGGTCGCATAGTCATGGGCCTTTTTGGGAGTACAGTACCGAAAACTGTAGAAAACTTTCGAGCGCTTTGTACGGGTAGCACAACAACTTCTCATCACATTTCAGGAGAGAAAGGGATGGGAAGAAGTGGGAAGCCTCTACATTATAAAGGGAGCACATTCCATAGGATAATACCAAGCTTTATGGTCCAGGGGGGTGATTTCACTCTTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATACTGGACCAGGATATTTATCAATGGCCAATTCTGGGCAAGACACCAACGGCTCCCAGTTTTTCATAACAACAGTAAAAACAAGCTGGCTGGATGGACGCCATGTTGTATTTGGTAAGCTACTTTCTGGTATGGACGTTTTGTACAAGATTGAAGCACAAGGAAGTGAAAGTGGCTCGCCCAAAAGTAAGGTTGTCATAGTAGACAGTGGAGAATTAACTTCATGA 741 0.4372 MASRGTGTLIFACLLWLFFLCATIAFFQIIMVENESDHVSSSQNKFITAQHHHPDAPLEEGLEAVTHKVYFDVEIDGKLLGRIVMGLFGSTVPKTVENFRALCTGSTTTSHHISGEKGMGRSGKPLHYKGSTFHRIIPSFMVQGGDFTLGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKLLSGMDVLYKIEAQGSESGSPKSKVVIVDSGELTS. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02100 246 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 128 145 IPR020892 GO:0003755|GO:0006457
Seca6g02100 246 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 71 241 IPR002130 GO:0000413|GO:0003755
Seca6g02100 246 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 70 243 IPR002130 GO:0000413|GO:0003755
Seca6g02100 246 Gene3D - 59 246 IPR029000 -
Seca6g02100 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 219 IPR002130 GO:0000413|GO:0003755
Seca6g02100 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 191 203 IPR002130 GO:0000413|GO:0003755
Seca6g02100 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 87 102 IPR002130 GO:0000413|GO:0003755
Seca6g02100 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 133 145 IPR002130 GO:0000413|GO:0003755
Seca6g02100 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 176 191 IPR002130 GO:0000413|GO:0003755
Seca6g02100 246 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 68 244 - -
Seca6g02100 246 CDD cyclophilin_ABH_like 67 242 - -
Seca6g02100 246 FunFam Peptidyl-prolyl cis-trans isomerase 63 245 - -
Seca6g02100 246 SUPERFAMILY Cyclophilin-like 64 244 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02100 Seca-Chr6 80974509 80979792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02100 81 241 U-box Gene Family AT5G67530 39.877 1.46e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02100 K01802 - gmx:100798499 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02100 6 80974509 80979792 Seca6g02100 6 80974509 80979792 ECH