Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02095 ATGACCTCATCGAACCACCACCCGCCACTATCCGACTCCGACTCTGACGGAGGCCCCTCAACCTCCGAGGCCCTCCGCCATTCCGACCTCTCCGACTCCATATTTAAATCCTACTTCAATTTCTCCGGCCACTCCTCCTCCTCCGCCACCGCCACCGCCACCGACCTTTCCAAGATCCGTTCCTTCCTCACCTCCTCCTCCTCCGGCGCTCTATCGTGCCTGATATGCCTCGAACGCATCAAGCTCTCCGACCCCACTTGGTCATGCACCTCCCTCTGCTTCGCCGTCTTCCACCTCATCTGCATCCAAAGCTGGGCACGCCAGGCCTCCGACCTCGCCGCCGCACGCGCCGCCACTCGCCTCCCCATCTCCTCCGACAAGGCCTCCGACACCGCCGTCTGGAACTGCCCCAAATGCAGGGTGGAATACCCCAAATCCCACATCCCCAAAACGTACCTCTGCTTCTGTGGGAAATTGGAGAACCCTCCCAGTGATGATCCATGGGTTTTGCCCCATTCCTGTGGCGACGTTTGTGGAAGGCCATTGAAGCACAATTGCGGGCACCATTGTTTGTTGCTTTGCCATCCCGGGCCTTGCCCCTCTTGCCCTCAACTCGTCAAAGTTCGATGCTTTTGTGGGTCCCACCAAGACACTCGAAGATGCGGGTTCAAGGAATTTTCTTGTGAGAGTCCTTGTTCCAAGGTGTTGGATTGTGGTCTTCACAGGTGCGTTGAGATTTGCCATCGTGGTCCTTGCCCTCCTTGCCGGATCCGTGGCGTGTATAGCTGCCAATGTGGGAAGAGAAAAGAGGAAAGGGAATGCTGTGATCGTGTTTTCCGATGTCATGATCCTTGTGAGAAGAAGCTTAGCTGTGGGAAGCATGTTTGTGAGAGAGGGTGCCATTCTGGTGAGTGTGGTGAGTGTCCCTTACAGGGGAAGAGAACATGCCCTTGTGGGAAAAGGGTCTATGAAGGAATACCTTGTGATGCTCCTGTGCAAGTGTGTGGGGCCACCTGTGATAAAATGTTACCTTGCGGGTATCACAGGTGCCCTGAGAGATGCCACCGTGGGCAATGCATTGAGACTTGTAGGACTGTTGTGAAGAAGTGCTGTCGCTGTGGAAGCCTCAAGAAAGATGTTCCTTGCTATCAAGATCTGGCATGTGAAAGGAAGTGTCAGCGGATGCGTGATTGTGGTCGGCATGCCTGCAAACGTCGCTGCTGTGATGGGGATTGCCCTCCCTGCTCAGAGATATGTGGCAGGAGGCTCCGATGCAAGAACCATAAATGCCCTTCTCCATGCCATAGAGGTGCCTGTGCTCCTTGTCCAATAATGGTGACAATTACGTGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGCACTGAAACGGATCAAAAGCCACCTAGATGTCCTAAACCGTGTCCTATTAAGCCTTTATGTCGGCATGCATTAAACTGCAAGCCACACAAATGCCATTATGGAGCCTGCCCTCCTTGTCGGCTACCTTGTGCAGAAGAGTTTCAATGTGGCCATACATGCAAATTAAGGTGCCATGGTGCTAAGCCTCCTCCAAATCCAGAGTTTACTCTCAAACCAAAGAAAAAGAAGATTATACATCAAAATGAAAGTGTTCCCGGCACTCCATGCCCTCCTTGCCCAGAACTTCTGTGGAGACCATGTGTCGGGCAACACATTGGAGCTGAGAGAATGATGGTCTGCTCTAATAAATCACAGTTCTCCTGTGAAAATTTATGTGGTAATCCTCTACCATGTGGTAATCATTATTGTACTAAAACCTGTCATGCCTTGGAGAACCAGTCTTCGATGAACCAGTCACTGAGAGGCGAGCCTTGTGAAAATTGTCCTCTTCCTTGCCAAAAGGAAAGAGAGCCTAAATGTTCACATCACTGCCCTCAACCATGCCATCCTGGAGACTGCCCCCCATGCAAGGTGCTCATTAAACGGTCATGTCATTGTGGCGCAATGGTCCATGCTTTTGAGTGCATATATTACAACACCTTGTCTGCAAAGAGTCAAGAGACTGTCCGTTCATGCGGTGGGCCATGTCATAGAAAGTTACCAAATTGTACACATCTATGCCCAGAAACCTGTCATCCTGGTCAATGCCCAAATCCTGAGAAATGCTGTAAAAAGCTACTGCAAACTAAACAGACCAGAATACCTATTATGTTAATCCAATTTTGTCTTCTAAAATATGAACTCTTTCTTCACAAGGTCAATGTTCGTTGCAAATGCCAAACATTGAAAAAAGAGTGGCTTTGTCAAGATGTTCAAGCAGCCTATCATCGTTCTGGTTGCCATCCAAAGGATATACCAAAAAATCAATTTGGAATTGGACTTATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAATTACGTAAATCTAAAGTTTCAGAGGTAACCGAGCCAGATAATGAAAAATCAGTTCCAAAGCGACGAAAAAGGCGACAACGGGTACTAGAATCAAAGGAAATGACAAAACTACAGAAAATCATTTCCAGAACAAAGCAGCTTCTTCTGTTTGTCTTTATTTTGGTCATACTTGTTGCTGCTACATATTATGGGTACAAGGGACTTTTATGGCTCTCAGACTGGATGAATGAACTTGATGAACGAAGACAAAGATCTTCCCGAATCAGATGA 2694 0.4859 MTSSNHHPPLSDSDSDGGPSTSEALRHSDLSDSIFKSYFNFSGHSSSSATATATDLSKIRSFLTSSSSGALSCLICLERIKLSDPTWSCTSLCFAVFHLICIQSWARQASDLAAARAATRLPISSDKASDTAVWNCPKCRVEYPKSHIPKTYLCFCGKLENPPSDDPWVLPHSCGDVCGRPLKHNCGHHCLLLCHPGPCPSCPQLVKVRCFCGSHQDTRRCGFKEFSCESPCSKVLDCGLHRCVEICHRGPCPPCRIRGVYSCQCGKRKEERECCDRVFRCHDPCEKKLSCGKHVCERGCHSGECGECPLQGKRTCPCGKRVYEGIPCDAPVQVCGATCDKMLPCGYHRCPERCHRGQCIETCRTVVKKCCRCGSLKKDVPCYQDLACERKCQRMRDCGRHACKRRCCDGDCPPCSEICGRRLRCKNHKCPSPCHRGACAPCPIMVTITCACGETHFEVPCGTETDQKPPRCPKPCPIKPLCRHALNCKPHKCHYGACPPCRLPCAEEFQCGHTCKLRCHGAKPPPNPEFTLKPKKKKIIHQNESVPGTPCPPCPELLWRPCVGQHIGAERMMVCSNKSQFSCENLCGNPLPCGNHYCTKTCHALENQSSMNQSLRGEPCENCPLPCQKEREPKCSHHCPQPCHPGDCPPCKVLIKRSCHCGAMVHAFECIYYNTLSAKSQETVRSCGGPCHRKLPNCTHLCPETCHPGQCPNPEKCCKKLLQTKQTRIPIMLIQFCLLKYELFLHKVNVRCKCQTLKKEWLCQDVQAAYHRSGCHPKDIPKNQFGIGLIPCNSDCKSKVQVVESELQLRKSKVSEVTEPDNEKSVPKRRKRRQRVLESKEMTKLQKIISRTKQLLLFVFILVILVAATYYGYKGLLWLSDWMNELDERRQRSSRIR. 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02095 897 Pfam NF-X1 type zinc finger 593 603 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 Pfam NF-X1 type zinc finger 345 363 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 Pfam NF-X1 type zinc finger 492 502 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 Pfam NF-X1 type zinc finger 511 520 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 Pfam NF-X1 type zinc finger 419 443 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 Pfam NF-X1 type zinc finger 635 652 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 Pfam NF-X1 type zinc finger 291 309 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 Pfam NF-X1 type zinc finger 238 256 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 Pfam NF-X1 type zinc finger 398 416 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 Pfam NF-X1 type zinc finger 186 203 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 27 521 IPR034078 GO:0003700
Seca6g02095 897 CDD NF-X1-zinc-finger 388 436 - -
Seca6g02095 897 CDD NF-X1-zinc-finger 281 328 - -
Seca6g02095 897 CDD NF-X1-zinc-finger 623 664 - -
Seca6g02095 897 CDD NF-X1-zinc-finger 228 276 - -
Seca6g02095 897 CDD NF-X1-zinc-finger 415 463 - -
Seca6g02095 897 MobiDBLite consensus disorder prediction 814 833 - -
Seca6g02095 897 MobiDBLite consensus disorder prediction 1 24 - -
Seca6g02095 897 SUPERFAMILY RING/U-box 71 148 - -
Seca6g02095 897 SMART znfxneu3 593 625 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 SMART znfxneu3 291 310 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 SMART znfxneu3 238 257 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 SMART znfxneu3 212 234 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 SMART znfxneu3 398 417 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 SMART znfxneu3 511 556 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 SMART znfxneu3 345 365 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 SMART znfxneu3 635 653 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 SMART znfxneu3 488 503 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 SMART znfxneu3 186 204 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 SMART znfxneu3 698 720 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 SMART znfxneu3 425 444 IPR000967 GO:0005634|GO:0008270
Seca6g02095 897 CDD NF-X1-zinc-finger 174 222 - -
Seca6g02095 897 CDD RING-CH-C4HC3_NFXL1 71 140 - -
Seca6g02095 897 CDD NF-X1-zinc-finger 335 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02095 Seca-Chr6 80903761 80916563 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Seca6g02095 zf-NF-X1 0.0042 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02095 K15683 - gmx:100799540 1545.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02095 6 80903761 80916563 Seca6g02097 6 80921968 80949072 ECH
Seca8g01586 8 29443869 29447926 Seca6g02095 6 80903761 80916563 ECH
Seca6g02095 6 80903761 80916563 Seca6g02095 6 80903761 80916563 ECH
Seca6g02095 6 80903761 80916563 Seca6g02097 6 80921968 80949072 PCT