Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02094 ATGAAGAAACCACCACCTTCCTCCTCCGTCAATGTCCCTCTCGCCGCCGTCACCCTCGCCGTCATAGTTATACTCTCTTTTCTTCCCTCCTCGCATGGTCTAGGCTCCGGCACCACCCTGGCCGTCACCGACGCCTCCGCCACCGTATGCGGCATCGTAGCAGGGGAATCCACACAGCGCATTGAGTGTTACCGTCCCGAGCAGATCGTTCCCGTCGTCCCCAACGTTTCCTTTTCCTCCATTTCCGGCGGGAGGGACTACTTCTGCGGCCTCAGGTCCGGTAACTACAGTTTACATTGCTGGAACACTAACACTACCTCTTCTTTCCAAGGAAAAAGGCTTTACAACAATGACTCTGTTCTATTGGAGAATCTTGCAGTTGGGGATGACCAAGTTTGCGCCACAGTGGTGGGTACTGGAACGGTTGAATGTTGGAGAACCACTAGGGCTTTTAATTTGTCATCTGGGTCTGATCAATTTGCTTCGATTTCATCTGGGTATGGTTTCTCTTGTGGAATTCTTAGGAATAGTTCTCGGGTTCAGTGTTGGGGAGAGATGGGTATGGCTAATCGGATACAGAATGAGTTTGGGAACATGTCTATGTTGAGTCTTGTAGCTGGTGGTTCACATGTTTGTGGGTTGAATTCAACAGGGTTTTTGGTATGCAGAGGAAGTAACAGTTCTGGGCAATTGAATGTTCCCCAAGGTGGGGCTTTTGAGTATGATGGGTTAGCATTAGGAGCTGAGCATGGTTGTGCTATTAGAAGATTGAATGGTTCTGTTGTTTGTTGGGGTGGTAGAGGGCAATTCTCTGTGAATGTTACAGAAGGAGTTTCTTTTGAGTTGATTGTTTCAGGGTCCAATTTTACTTGTGGATTGACAACAAGCAATTTTTCAGTTATGTGTTGGGGCCCTGCTTGGTCTAATGGTAATGGTTCTAGTTCAAGGTTTGAGCTTCCTTTGCCTCGTATTCTTCCAGGGCCTTGTGTTCAATCTTCTTGTAGTGAGTGTGGTATATATCCTGATTCTCAATCTCTATGCTCTGGCTCTGGTCACATTTGCAAGCCAAATACTTGTAGGCCTCAAATAGCAGTGCTGCCACCGCCACCGCCGCATCAACCACCACCAGCATCCTCTCCTCCATCATCACCATCTCGATCAAAGACCTTGACAAGGGGCTTATTGGCATTTGCCATTGTTGGATCCGTGGGGGCTTTTGCTGGTATATGCACAATAGTTTATTGCTTATGGAGTGGAGTTTGTTTTGGTAAGAAGAAAGTGCACAATTCTGTGCAACCAACAATCACTAGAGGTAGCAGCAATTCTAGTGGTGGTGGTGCTTCCAATCATAGCCCATCTTCAATAGCATCCACTATTAGGCGTCAAAGTTCAAGAATAATGAGGCGCCAGAGGAGTGGAACCTCATCAACAAAGCACCCAGAAAGGGCTGAAGAGTTCACCCTTGCTGAGCTTATAACAGCCACCAACAATTTCTCACTTGAGAACAAGATTGGTGCTGGAAGTTTTGGTGTTGTGTACAAAGGTAAACTCACAGATGGTCGTGAGGTGGCAATCAAGAGAGGTGAAACAGGTTCAAAGATGAAGAAGTATCAAGAGAAAGAAAGTGCATTTGAGTCTGAAATTGCCTTCTTGTCACGTTTACACCATAAGCACTTGGTTAGGCTAGTTGGGTACTGTGAAGAGAAAGATGAGAGGCTATTGGTGTATGAGTACATGAAGAATGGAGCATTATATGATCATTTGCATGACAAGAACAATGTGGAAAAGGGTAGCAGTGTCTTGAATTCATGGAAAATGAGGATCAAAATTGCCTTGGATGCTTCAAGAGGAATAGAATATCTACATAACTATGCAGTTCCATCTATAATTCATAGAGATATCAAGTCTTCAAACATCCTCATTGATGCAACTTGGACAGCAAGAGTATCTGATTTTGGATTGTCATTGATGAGTCCAGAATCTGACCGTGAATACAAACCAACAAAAGCAGCAGGAACACTTGGATACATTGATCCAGAGTACTATGGTCTAAATGTGTTAACAGCAAAGAGTGATGTCTATGGGCTTGGAGTTGTACTACTAGAACTTTTAACAGGAAAGAGAGCTGTATTCAAGCATGGTGAAGACCCTCTAAGTGTTGTGGACTTTGCAGTACCTGCAATTTTGGCTGGAGAATTGGTGAAAATTTTGGATCCCAGGGTTGGTCCACCAGAGTCAAATGAAGCAGAAGCAGTGGAGTTAGTGGCTTATATTGCTATGAATTGTGTGAATTTGGAAGGGAAAGATAGACCAACGATAGCTGATATTGTGGCCAATTTGGAGCGAGCTTTGGTTATTTGTGATGGTAGCCATGACAGCATTTCCAGCATTACAATCTCTGTTGTTTCAGATTGA 2415 0.4455 MKKPPPSSSVNVPLAAVTLAVIVILSFLPSSHGLGSGTTLAVTDASATVCGIVAGESTQRIECYRPEQIVPVVPNVSFSSISGGRDYFCGLRSGNYSLHCWNTNTTSSFQGKRLYNNDSVLLENLAVGDDQVCATVVGTGTVECWRTTRAFNLSSGSDQFASISSGYGFSCGILRNSSRVQCWGEMGMANRIQNEFGNMSMLSLVAGGSHVCGLNSTGFLVCRGSNSSGQLNVPQGGAFEYDGLALGAEHGCAIRRLNGSVVCWGGRGQFSVNVTEGVSFELIVSGSNFTCGLTTSNFSVMCWGPAWSNGNGSSSRFELPLPRILPGPCVQSSCSECGIYPDSQSLCSGSGHICKPNTCRPQIAVLPPPPPHQPPPASSPPSSPSRSKTLTRGLLAFAIVGSVGAFAGICTIVYCLWSGVCFGKKKVHNSVQPTITRGSSNSSGGGASNHSPSSIASTIRRQSSRIMRRQRSGTSSTKHPERAEEFTLAELITATNNFSLENKIGAGSFGVVYKGKLTDGREVAIKRGETGSKMKKYQEKESAFESEIAFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYDHLHDKNNVEKGSSVLNSWKMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPESDREYKPTKAAGTLGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAVFKHGEDPLSVVDFAVPAILAGELVKILDPRVGPPESNEAEAVELVAYIAMNCVNLEGKDRPTIADIVANLERALVICDGSHDSISSITISVVSD. 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02094 804 ProSiteProfiles Protein kinase domain profile. 498 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02094 804 MobiDBLite consensus disorder prediction 364 387 - -
Seca6g02094 804 MobiDBLite consensus disorder prediction 364 382 - -
Seca6g02094 804 FunFam serine/threonine-protein kinase-like protein CCR1 467 578 - -
Seca6g02094 804 ProSitePatterns Protein kinases ATP-binding region signature. 504 526 IPR017441 GO:0005524
Seca6g02094 804 MobiDBLite consensus disorder prediction 434 481 - -
Seca6g02094 804 MobiDBLite consensus disorder prediction 434 473 - -
Seca6g02094 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Seca6g02094 804 Gene3D Phosphorylase Kinase; domain 1 457 578 - -
Seca6g02094 804 Gene3D - 155 355 IPR009091 -
Seca6g02094 804 Pfam Protein kinase domain 499 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02094 804 FunFam Serine/threonine-protein kinase-like protein CCR4 579 797 - -
Seca6g02094 804 SMART serkin_6 498 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02094 804 Gene3D Transferase(Phosphotransferase) domain 1 579 792 - -
Seca6g02094 804 SUPERFAMILY Protein kinase-like (PK-like) 476 780 IPR011009 -
Seca6g02094 804 SUPERFAMILY RCC1/BLIP-II 33 266 IPR009091 -
Seca6g02094 804 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 198 790 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02094 Seca-Chr6 80888903 80891317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02094 17 804 Receptor kinase-like Gene Family AT3G55950 60.961 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Seca6g02094 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02094 - - gmx:100786639 1227.62