Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02089 ATGCCAACGCCGGTGGGAGTGGCGAGGCAATGCTTGACGGCGGAGGCGGGTCGAGCACTGGACGAGGCAGTTGCGGTGGCGCGTCGTCGAGGCCACGCGCAGACGACGTCGCTTCACGCGGTGTCGGCGCTTCTTTCTCTACCGTCATCGTCGGTTCTCCGTGACGCGTGTTGCCGCGCGCGAAACTCAGCGTACTCGCCACGGCTTCAGTTCAAGGCACTCGATCTTTGCCTTTCGGTTTCGCTCGATCGTGCACCTTCTTCTCACAATCACCTCTCTTCCGATCACGACCCTCCCGTTTCTAACTCTCTCATGGCCGCTATTAAACGTTCTCAAGCTAACCAACGCCGTCACCCTGACAATTTCCACTTCTACCATCACCACCAAAACCAACAGCACCAGCAACCGTTTTCCGTTTCCTCCGTTAAGGTGGAGCTTCAGCATTTGATTCTATCTATCCTCGATGACCCGGTTGTTAGCCGCGTCTTCGCTGAAGCGGGTTTTCGGAGCTCCGAAATCAAGCTTGCTATATTACGGCCTCTGCCACACCTTTTAAGGTCGCGTGGACCACCGATTTTCCTCTGCAACCTGCCGGAGCAGCCTCGCCGGGGGTTTGGATTCCCGTTTTTCCCTGGCTTTGGTGATGAGGAGGAGAATTTCCGGCGAATCGGGGAGGTTCTTGTTCGGAGCAGGGGGAGGAATCCCCTGCTTCTCGGCGCATGTGCTAATGATGCTCTTCGGAGCTTCACGGAGGCTGTGGAGAAACGGAGGGATGGGGTTTTGCCCTTGGAGTTAACGGGTTTGCGTGTGGTTTGCATTGGGAAGGAGGTGGAGAGTGGTGATGGTGAGGTCGTGGGTTCGAGGTTGAATGAGATTGCTAAAATGGCGGAGGAGTGTGTGGGGCCAGGTGTTGCGGTGAGCTTTGGGGACTTGAAGGCTTTTGTGAGTGATGATGATGGGTGTGAGGAAGCTGTGAGGTGTGTTGTTGGGGAATTGGCTAAGTTGTTGCAGCTTCATTATGACAAGTTTTGGTTGCTAGGTGCTGCTGCTAGCTATGAGAGCTACTTGAAGTTTCTGGGTAGGTTCCCTTCTATAGAGAAAGATTGGGACTTGCAGCTTCTTCCAATCACCTCTGTTAAGCCTTCTCCCATGCCTGCAGAATCATATCAGAGGCCCAGGTCCAGCTTAATGGATTCATTTGTACCATTTGGTGGCTTTTTTTCGTCACAGTCTGATTTGAAAGGTCCATTAAATAGCTCATTTTGTTGTGTTCCTCCCTGTCATCAATGTGGTGAAAAGTGTGAACATGAAGTCCTTGCTGCTTCAAAGGAAAGATTGTCTGCTTCAGTTCCTGATCCATACCAATCTAACTTACCGCCATGGTTGCAGATTGCAGAATTTGGCACAGCAAAGGGATTGAATGTTAAGACCAAAGATGATGGTGTTTTGCTGGATAATAATGAATCTGGGCCAACGCATAAGAATTTGGACAAGATATGCCAGAATCTGCACCAGCGAATTGCTGATTCAAATACTTGTCCAACTGTTGTGGGGTTTCATTGTACTGAAAGCAAAAAGGAAGATGCTGACAACCACAGCAGCAAAATTACAGACAAATCACCCAGTGAATACATCAATCTCAACTCCCATGTACCTGTTGGTGTACAAATGATGTCTACATCACAATCTAGCAGTCCTTTTCCTGTGCTTTTCAAGGCAAAGCAGGAGAAATATACTTCGAAACTCCCTGAGATGTTCCAGAAAGCGGAAGATCTCGAGTCAGGTGACCTAAGATCATGCAACATGTCCAGTTCAAGTGTGTGTGATGGTAGTCAAATGTCTCCCACATCTGTGACTTCTGTAACCACAGACCTAGGTTTAGGAATATGCTCTTCTCCTACCAGCAATAAATCGAGGAAACCTACTATTCAATATACAATGGAGCCTCCAAAGGAAATTCCCAATCGATTTTCTTCAGACTTTAATTTGGCTGATGGGAATATGTGGAAGCATCCATCCCAGTCTTCATCCTGCTTAAGTTTTGACTATTGTCGACAAATTGATGCAAGAAATCCCAAAATTCTTTTTGAAGCTCTTTCCAAGGAGGTAAGCTGGCAAGATGAAGCCTTGCGGGCTATCATCAAGACAATAGTTGGCAGCCAAACAAAAAGGGTTAAACACCACGGAGCAAATCAGCGGGGTGAAATATGGATGAATTTTGTGGGACCAGATAGGCATGGTAAAAAGAAAATTGCTGTTTGTCTAGCTGAGTTATTATATGGAAGCCAGGAAAGCTTTATTTTTGCAGATCTAAGTTGTGAAGAAATGAAGGGATGCAATGTGAAATTCAGAGGGAAGACTACCCTTGATTTTATTGTCGGGGAGTGTTGCAAGAAACCCTTGTCTGTTGTTTTCCTTGAAAATGTAGACAAGGCAGATACGGTAGCTCAAAGTAGTTTGTCTCAAGCCATCAAGACAGGAAAAATTACAGACTCACATGGACGAGAAATTAGTGTAAACAATGCAATATTTGTGTTTTCTTTCTCAGGTTACCAAAATAGTTCAATGCCAACAAGGGAACCTTCCAACTATTCTGAGGAAAGAATACTCAAGGCAAAAGGGGGAGGTATGAAGATAAAAGTTGAACAAGTGTCTGGAGACATCAGAAGCCAAAGTGTCAGTGTAGCTAACAATTCAACAGATGCCATTCCTAATCTAATTTTCATAAACAAACGAAAGTTGATTGGTGACAATGAATTTCATGATCCGCATGTACTCTCAGATACGGCTAAAAGGGCACATACAACATCAAATTGGCTTTTAGATTTGAATCTTCCAGCTGAAGAGAATGATCCGAAACAGACAGATGATGGGAACTCTGAACATGTCTCAACAGAGAACCAAAACTTTTGGTTGCAAGATTTATATAATCAGGTTGATGAAACAGTTGTTTTTAAACCTTATGATTTTGATGCACTTGCGGATAGAGTGTTGAAAGTGATCAAAGGTAACTTCAACAAAATCCTTGGATCCGAGTGTTGCTTACAAATCCAGACAGAAGTCATGGACCAATTGCTTGCAGCAGCATATGTCTCAGACACAGATACGGAGGTAGAGAAATGGGTGGAGCAAGTTCTCTGTGGAGGGTTTACAGAAGTACAGAAAAGATACAACCTCACTGCCAGTTCTATTGTGAAACTAGCTACATGTCCAGAGCAACCTCCAAGTGTACACCTTCCGCCAATGATAATTTTAGATTGA 3261 0.4545 MPTPVGVARQCLTAEAGRALDEAVAVARRRGHAQTTSLHAVSALLSLPSSSVLRDACCRARNSAYSPRLQFKALDLCLSVSLDRAPSSHNHLSSDHDPPVSNSLMAAIKRSQANQRRHPDNFHFYHHHQNQQHQQPFSVSSVKVELQHLILSILDDPVVSRVFAEAGFRSSEIKLAILRPLPHLLRSRGPPIFLCNLPEQPRRGFGFPFFPGFGDEEENFRRIGEVLVRSRGRNPLLLGACANDALRSFTEAVEKRRDGVLPLELTGLRVVCIGKEVESGDGEVVGSRLNEIAKMAEECVGPGVAVSFGDLKAFVSDDDGCEEAVRCVVGELAKLLQLHYDKFWLLGAAASYESYLKFLGRFPSIEKDWDLQLLPITSVKPSPMPAESYQRPRSSLMDSFVPFGGFFSSQSDLKGPLNSSFCCVPPCHQCGEKCEHEVLAASKERLSASVPDPYQSNLPPWLQIAEFGTAKGLNVKTKDDGVLLDNNESGPTHKNLDKICQNLHQRIADSNTCPTVVGFHCTESKKEDADNHSSKITDKSPSEYINLNSHVPVGVQMMSTSQSSSPFPVLFKAKQEKYTSKLPEMFQKAEDLESGDLRSCNMSSSSVCDGSQMSPTSVTSVTTDLGLGICSSPTSNKSRKPTIQYTMEPPKEIPNRFSSDFNLADGNMWKHPSQSSSCLSFDYCRQIDARNPKILFEALSKEVSWQDEALRAIIKTIVGSQTKRVKHHGANQRGEIWMNFVGPDRHGKKKIAVCLAELLYGSQESFIFADLSCEEMKGCNVKFRGKTTLDFIVGECCKKPLSVVFLENVDKADTVAQSSLSQAIKTGKITDSHGREISVNNAIFVFSFSGYQNSSMPTREPSNYSEERILKAKGGGMKIKVEQVSGDIRSQSVSVANNSTDAIPNLIFINKRKLIGDNEFHDPHVLSDTAKRAHTTSNWLLDLNLPAEENDPKQTDDGNSEHVSTENQNFWLQDLYNQVDETVVFKPYDFDALADRVLKVIKGNFNKILGSECCLQIQTEVMDQLLAAAYVSDTDTEVEKWVEQVLCGGFTEVQKRYNLTASSIVKLATCPEQPPSVHLPPMIILD. 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02089 1086 MobiDBLite consensus disorder prediction 943 964 - -
Seca6g02089 1086 ProSiteProfiles Clp repeat (R) domain profile. 8 183 IPR004176 -
Seca6g02089 1086 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 3 1063 - -
Seca6g02089 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 695 1027 IPR027417 -
Seca6g02089 1086 Gene3D - 10 179 IPR036628 -
Seca6g02089 1086 Gene3D - 675 895 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02089 Seca-Chr6 80789479 80795563 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02089 - - gmx:100800606 1695.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02089 6 80789479 80795563 Seca6g02089 6 80789479 80795563 ECH
Seca2g04894 2 135398618 135401521 Seca6g02089 6 80789479 80795563 ECH
Seca8g01582 8 29334737 29338039 Seca6g02089 6 80789479 80795563 ECH
Seca6g02722 6 91869327 91874734 Seca6g02089 6 80789479 80795563 ECH
Seca6g02089 6 80789479 80795563 Seca8g01582 8 29334737 29338039 ECH
Seca6g02089 6 80789479 80795563 Seca6g02722 6 91869327 91874734 ECH