Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02081 ATGTGCATTAGTTCAAAAAGTAAACTTTCTCCCTCAAACCACGTCATGGAAAGCAAGTTCCAGAACTCAGTTTTGCTCGAATTAGCAGCATGCAATGATTTTGAGGCTTTCAAAAAGGAAGTAGAAGAGAAAGGTTTTGATGTCAATGAGGCAGGATTTTGGTATAGTAGAAGAATTGCATCAAATAAGATGGGATATGAAAAGAGGACATCCCTCATGGTTGCTTCTTTGTTTGGAAGCACTAATGTGATGAAGTATATTATTGAGACTGGCAGGGTTGATGTGAACATGGCCGTTGGTTCTGATAGGGCCACTGCTCTCCATTGTGCTGTTGCTGGGGGCTCTGAATCCAACCTTGAGATTGTCAAACTCTTGCTTGATGCTGGGGCAAATTCTGAGTGCCTTGATGCGAGTGGTAATAAACCTGTTAATCTGATTGCTCCTGCCTTTAATACTTTGTCCAAATCACGAAGGAAGGCTATGGAGTTGTTGCTCAGAGGTGGGGAGGGAGATCAAATGATCAACCTAGAAGAAGGAACTGAGAAGAAAGAATATCCTATTGATATATCATTGCCTGACATAAACAATGGTGTTTATGGATCAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCTTACACCCACGACTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAACGCGAGGAGGAGAGACCCACGGAAGTACCCTTACAGCTGTGTTCCCTGCCCTGAGTTTCGCAAAGGGACCTGCCAGAAGAAAGATGCCTGTGAATATGCACATGGTGTTTTTGAGTCCTGGCTACATCCTGCCCAATACCGAACAAGGCTTTGCAAGGATGAGATTAGCTGTTCTAGGAAAGTTTGCTTCTTTGCTCACAAGCCTGAAGAGTTACGCCCTGTGTATGTTTCCACTGGATCAGCATTGCCTTCACCAAAATCTTCTTCAGTTAGTGCACTTGATACAAAAGTGATGTGTCCTTTGTCTCTTAGTTCCTCATCTTTGCCAATGTCAACCGTTTCAAGTTCAACACCACTCATGTCTCCCTTGGCAGCTGTTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAATAAAATCAACCTCACTCCACCTTCATTGCAGCTCCCAGGTAGCCAGCTGAAAACTGCTTTCAGTGCAAGGGATTTTGATCTTGAAATGGAACTGCTTGGTCTTGAAAGACCTTCTAATCAACAGCAGCAACAATTGATAGAAGAGATTGCCCGACTCTCTTCCCCGTCTTTCCAGAACAAGGAATTCAATAGGATTGGTGATTTGAAGCCAACTAACCTTGATGACTTGTTAGGATCTGTTGATACTTCTGTACTATCTCAATTACATGGTCTATCAATGCAGCCTTCAACACCTACACAATTGCAATCTCCAAGTAGGCTTCAGCTGCACCAAAACATGAACCATCTTCGGGCAAGTTATCCATCCAACATTGCCTCCACTCCTGTGAGAAAATCCTCAGCATTTGGGTTTGATTCATCAGCTGCTGTGGCTGCAGCTGTGATGAATTCAAGGTCTGCTGCATTTGCAAAGCGAAGCCAAAGTTTTATGGATCGTGGCGTGGCAAGACACCACCATCTTGGTGTGTCTTCTTCAGCTTCCAACCCCACCTGTAGGATGACCTCTGGCCTTTCAGATTGGACTTCACCTGATGGGAAACTGGATTGGGGCATGAATGGACACGAGCTGAACAAATTGAAAAAATCTGCTTCTTTTGGGTTCAGAAACAATGGGGTAACAACTGCCTCCCCATTGGTAAAGTCAGAAAATGCTGAACCAGATGTCTCATGGGTTCATTCATTTGTTAAAGATGTTTCCTCTGAGAGTTCTGAGATGTATAGTGCTGAGAAGCTGCAACTTGGTCTCCGGAAAGAGATGCTTTCACCATGGATGGAACAGCTGTATATGGAACAAGAGCAGATGGTAGCATAA 1980 0.4429 MCISSKSKLSPSNHVMESKFQNSVLLELAACNDFEAFKKEVEEKGFDVNEAGFWYSRRIASNKMGYEKRTSLMVASLFGSTNVMKYIIETGRVDVNMAVGSDRATALHCAVAGGSESNLEIVKLLLDAGANSECLDASGNKPVNLIAPAFNTLSKSRRKAMELLLRGGEGDQMINLEEGTEKKEYPIDISLPDINNGVYGSDEFRMYSFKVKPCSRAYTHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKKDACEYAHGVFESWLHPAQYRTRLCKDEISCSRKVCFFAHKPEELRPVYVSTGSALPSPKSSSVSALDTKVMCPLSLSSSSLPMSTVSSSTPLMSPLAAVSSPKSGSLWQNKINLTPPSLQLPGSQLKTAFSARDFDLEMELLGLERPSNQQQQQLIEEIARLSSPSFQNKEFNRIGDLKPTNLDDLLGSVDTSVLSQLHGLSMQPSTPTQLQSPSRLQLHQNMNHLRASYPSNIASTPVRKSSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFMDRGVARHHHLGVSSSASNPTCRMTSGLSDWTSPDGKLDWGMNGHELNKLKKSASFGFRNNGVTTASPLVKSENAEPDVSWVHSFVKDVSSESSEMYSAEKLQLGLRKEMLSPWMEQLYMEQEQMVA. 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02081 659 ProSiteProfiles Ankyrin repeat region circular profile. 102 131 - -
Seca6g02081 659 PANTHER UNKEMPT FAMILY MEMBER 27 620 IPR045234 -
Seca6g02081 659 Pfam Ankyrin repeats (3 copies) 28 131 IPR002110 GO:0005515
Seca6g02081 659 FunFam Zinc finger CCCH domain-containing protein 66 201 269 - -
Seca6g02081 659 Gene3D - 244 306 - -
Seca6g02081 659 ProSiteProfiles Ankyrin repeat profile. 102 137 IPR002110 GO:0005515
Seca6g02081 659 SMART ANK_2a 67 97 IPR002110 GO:0005515
Seca6g02081 659 SMART ANK_2a 102 134 IPR002110 GO:0005515
Seca6g02081 659 ProSiteProfiles Zinc finger C3H1-type profile. 243 270 IPR000571 GO:0046872
Seca6g02081 659 Gene3D - 4 193 IPR036770 -
Seca6g02081 659 SMART c3hfinal6 278 301 IPR000571 GO:0046872
Seca6g02081 659 SMART c3hfinal6 243 269 IPR000571 GO:0046872
Seca6g02081 659 SUPERFAMILY Ankyrin repeat 14 148 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02081 Seca-Chr6 80494341 80497182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02081 11 654 C2H2 Transcription Factor Family AT5G12850 37.849 1.81e-137 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca6g02081 Ank_2 2.9e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02081 - - gmx:100783376 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02081 6 80494341 80497182 Seca6g02081 6 80494341 80497182 ECH