Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02078 ATGGATGTGGAGTATGTGGAAAGTTTTGCTGGTAAGAATATAGAAGACCATGAGACTGATAATATAGTTTCTAATGATTTAGAAACTAATTTGGAAAATATTTCAACCAATGAGGCTATAATTGATGAGTATCCTAATCTCAGTCCTTGTGTTGGAGTGGAAGTGAAGAAGAATGTAATGTTTGCACGGGAAAAACTAAGAAAAAGGTGCTCAACTTCAAGAACAAATTGTAAGGCATCACTAGTAGTTTTGAAAGCATGGAAAAGAAGCAAGTGGGTTATCAAGAGTTTTAATAATGTTCATAATCATGACATGATTAGCCCTAAGAGTGTGAGCTATCTTCAGTGCCATAAAAAAATGAGTAAAGTGGCTAAGAACCTTGTTGAGAAGTTTGATGAAGAAGGGTACCAACAGGAAAGGTTGCTGCAATGTTTAATGGTGGAGATATGTCTTTTTCAAATAAGGATTGCTGGAATCATCTTAGAAATCTTAGAAGAAGAAATCTTGATGTTGGGGATGCCTAAGCTGTTTTGA 534 0.3521 MDVEYVESFAGKNIEDHETDNIVSNDLETNLENISTNEAIIDEYPNLSPCVGVEVKKNVMFAREKLRKRCSTSRTNCKASLVVLKAWKRSKWVIKSFNNVHNHDMISPKSVSYLQCHKKMSKVAKNLVEKFDEEGYQQERLLQCLMVEICLFQIRIAGIILEILEEEILMLGMPKLF. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02078 177 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 61 145 - -
Seca6g02078 177 Pfam FAR1 DNA-binding domain 64 105 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02078 Seca-Chr6 80472389 80473064 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g02078 FAR1 3.2e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02078 - - mtr:120575977 132.109