Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02073 ATGGGGGATAAAAAGCTCAGAAAGCATGGGAGAAACTTTAGAATGGTTTCCATTGTGATTACTATGGAAAATTACTATGATTCTAGCTGGCATCTGGGCACTACTTGGACTCAATGCAGTGATCATTCTCCTTTTCAAGTACCTACACAAATACTGCCTCAAGTCTCTGCCTCCTCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCAGTACCAATTGAAGGGGATAGAGCAACAAGTGCTTCCAAAAGTCACAGTCAAGCAGAGAAAAGGCGCAGAGATAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTGATTCCAAAGTCTGATAAGATGGACAAGGCAGCTTTATTAGGGAGTGTGATAGACCAAGTGAAGGATCTAAAGAGAAAAGCAATGGATGTTAGCAGAGCCATCACAGTTCCAACTGAAATTGATGAAGTATCAATTGATTATGACCATGTTCAAGATGAAAGCTGCACTAAAGTGAACAAATTCAAGGACAATATTGTCATCAAAGCTTCTGTTTGCTGTGATGATAGACCAGAATTGTTCTCTGAACTCATTCAAGTCCTCAAAGGATTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGGATTAAAAGCATATTGGTGCTTTGTTCTAAGGAAAGTGAAGGGGATGTTTGCCTTAGCACTCTCAAACAGTCCCTTAAATCAGCTGTGACTAAGATTGCTTCATCATCCATGACATCTAATTGTCCTACTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTTTGTACAGTGA 813 0.4121 MGDKKLRKHGRNFRMVSIVITMENYYDSSWHLGTTWTQCSDHSPFQVPTQILPQVSASSASLQFGEFHSWPVPIEGDRATSASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRAITVPTEIDEVSIDYDHVQDESCTKVNKFKDNIVIKASVCCDDRPELFSELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKESEGDVCLSTLKQSLKSAVTKIASSSMTSNCPTRSKRQRFFLPSHFVQ. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02073 270 Pfam Helix-loop-helix DNA-binding domain 84 130 IPR011598 GO:0046983
Seca6g02073 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 134 IPR036638 GO:0046983
Seca6g02073 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 130 IPR011598 GO:0046983
Seca6g02073 270 SMART finulus 87 136 IPR011598 GO:0046983
Seca6g02073 270 MobiDBLite consensus disorder prediction 75 94 - -
Seca6g02073 270 Gene3D - 76 138 IPR036638 GO:0046983
Seca6g02073 270 PANTHER TRANSCRIPTION FACTOR BHLH30 75 265 IPR045847 GO:0003700|GO:0006355
Seca6g02073 270 CDD ACT_UUR-ACR-like 177 212 - -
Seca6g02073 270 CDD bHLH_AtAIG1_like 77 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02073 Seca-Chr6 80383364 80385246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02073 22 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.346 6.92e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g02073 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02073 - - gmx:100799687 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02073 6 80383364 80385246 Seca6g02073 6 80383364 80385246 ECH
Seca8g00882 8 11709198 11711165 Seca6g02073 6 80383364 80385246 PCT