Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02071 ATGTCAAGCCCAGAGTCTCGATCATTTAATTGGCACTATACAGAGCTAGACGACAGAGACCTCGAAATCCGAGGCAGGACAGTGTTCTTCATCATCGTACTCTTCTCCATTATCCTTCTCGTCACCGTTCTCTTCATCTATACTCGTTGGGTTTGCCGCTACCACCGCCACCTCCCCACCACCACGTTCTCCGCCGCCGTCCAGGCGCCGCCGCCTCCGCCGCCGCAGGGACTGGACCCTGCTTCGATCAAGAAACTTCCCATCATCTTGCACCAGGCGCCGGCTGACCCAGACGGCGGCGCGTGGGAAGAAACGGAGTGCTGCATCTGCTTGGGGGAGTTCAGAGACGGTGAGAAACTGAAGGTGTTGCCAGTGTGTGAACACTATTTCCATTGTGAGTGCGTTGATAAGTGGCTAACTCATCAATCTAGTTGTCCACTCTGCAGAGCTTCTCTCAAGGTTGAATCTTCCTTCCCAAAGATTTTGATTCAGGAACCACCCCTTAGAATTGACATCCAATTCTAG 525 0.5295 MSSPESRSFNWHYTELDDRDLEIRGRTVFFIIVLFSIILLVTVLFIYTRWVCRYHRHLPTTTFSAAVQAPPPPPPQGLDPASIKKLPIILHQAPADPDGGAWEETECCICLGEFRDGEKLKVLPVCEHYFHCECVDKWLTHQSSCPLCRASLKVESSFPKILIQEPPLRIDIQF. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02071 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Seca6g02071 174 FunFam RING-H2 finger protein ATL66 70 154 - -
Seca6g02071 174 SMART ring_2 107 148 IPR001841 -
Seca6g02071 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 155 IPR013083 -
Seca6g02071 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 156 - -
Seca6g02071 174 SUPERFAMILY RING/U-box 101 155 - -
Seca6g02071 174 Pfam Ring finger domain 106 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02071 Seca-Chr6 80337566 80338090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02071 11 157 C3H Transcription Factor Family AT3G11110 42.667 2.17e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02071 - - gmx:100803278 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00880 8 11673237 11673758 Seca6g02071 6 80337566 80338090 PCT