Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02068 ATGGGAAGTTCAGTGCGTGTCAAAGAAGCTGTGCTAGTGACCCCTTCAGAGCCCACCCCGAGTGGTGTCCTTTTACTCTCAGCACTTGACTCTCAACTCTTTCTTCGCTTCACCATCGAATACCTGTTAATCTACAGGCCCGGCCCGGGCCTAGACCAAGGTACCATCACCGCTCGGTTAAAAGCGGCATTAGCAAAAGCCTTGGTCCCTTATTACCCATTGGCGGGGAGGGTTCGGGCCAGACCTGATGGCTCGGGCCTGGAAGTGCTTTGTCGAGCCCAGGGTGTGGTCTTCATCGAAGCCTGTTCTGACCGTTACACCGTCAACGACTTCGAAAAAGCCCCGAAAACGGTTACTCACTGGAGGAAACTCTTGTCGTTTTACGTCACCGATGTTCTCAGCGGATCGCCGCCGCTCGTCGTTCAGCTAACGTGGCTAGCCGATGGAGCCGCCGCCGTCGGCGTCGGAATCAACCACTGCATCTGCGATGGCATCGGAAGCGCGGAATTTCTCAATTTCCTTGCTGATTTAGCTTCTGGTAAACGCGGCGATCCCAAACCCAAGCCCGTTTGGGATCGCCACCTTCTAAACCCACCGAAAACGAAGATGACTCGGGCTTTTAACCCGGCGAGTCACCCCGAGTTTAACCGGGTCCCTGATCTCTGCGGGTTCATGAACCGGGTCACGAGTAGTCTCAAACCAACATGCATTGTGTTCGACAAGAGGAGACTCAACGAACTCAAGAGCGTGGCTCGGTGCACGAGTCAACCCGGCGAGTCGTACACGTCATTCGAGGTGCTCGCTGCACACGTGTGGAGGAGCTGGGCGAGAGCAATGGGGTTCCCACAGAACCAGATGTTGAAGCTTCTTTTCAGCGTGAACGTGAGGAACCGGGTCAAACCGGGTTTACCCGACGGGTACTATGGGAACGCGTTTGTTTTGGGGTGTGCGCAGAGCAGCGTTAGGGAACTTTCGGAGCGAGGGGTCGGGTATGGGTCGGGTTTGGTGAAGAGAGCGAAGGAGAGGGTGGACGGGGAGCACGTGAGAAGGGTGGCTGAGTTGGTGTCCGAATCAAGAGCGATTCCTGACTCGGTTGGTGTGCTTATATTGTCGCAGTGGTCGAGGATGGGTCTTGAGAGGGTTGAACTCGGAATGGGGAAACCGGTTCATGTGGGACCCATTTGCTGTGATAGGTACTGTTTGTTTTTGCCGGTGAAGGGTGAAAGGGACAGTGTAAAGGTCACGGTGGCGGTTCCCGCCGCCGCCGTTGACAATTACCACCGTTTCCTTAGGGAATCGCTTTTATGA 1308 0.5535 MGSSVRVKEAVLVTPSEPTPSGVLLLSALDSQLFLRFTIEYLLIYRPGPGLDQGTITARLKAALAKALVPYYPLAGRVRARPDGSGLEVLCRAQGVVFIEACSDRYTVNDFEKAPKTVTHWRKLLSFYVTDVLSGSPPLVVQLTWLADGAAAVGVGINHCICDGIGSAEFLNFLADLASGKRGDPKPKPVWDRHLLNPPKTKMTRAFNPASHPEFNRVPDLCGFMNRVTSSLKPTCIVFDKRRLNELKSVARCTSQPGESYTSFEVLAAHVWRSWARAMGFPQNQMLKLLFSVNVRNRVKPGLPDGYYGNAFVLGCAQSSVRELSERGVGYGSGLVKRAKERVDGEHVRRVAELVSESRAIPDSVGVLILSQWSRMGLERVELGMGKPVHVGPICCDRYCLFLPVKGERDSVKVTVAVPAAAVDNYHRFLRESLL. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02068 435 Gene3D - 2 216 IPR023213 -
Seca6g02068 435 Pfam Transferase family 4 423 - -
Seca6g02068 435 Gene3D - 225 429 IPR023213 -
Seca6g02068 435 PANTHER ACYL TRANSFERASE 4 4 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02068 Seca-Chr6 80181912 80183219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02068 5 432 Monolignol Biosynthesis Gene Families AT5G48930 27.803 5.27e-47 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02068 - - psat:127083994 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02068 6 80181912 80183219 Seca6g02068 6 80181912 80183219 ECH
Seca8g00877 8 11591001 11592329 Seca6g02068 6 80181912 80183219 PCT