Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02056 ATGGCTGGAAATTCCCCATGTGCTTCATGCAAGCTGCTGAGACGCCGTTGCGCCAAAGATTGCATCTTTGCTCCTTATTTCCCTTCTGATGATCCTCAAAAGTTCGCCATAGTTCACAAGGTTTTTGGTGCTAGCAACGTTAGCAAAATGCTGCAGGTAGAACTTCCGGTTCATCAGAGAGCAGATGCAGTGACGAGTCTAGTGTATGAAGCACATGCAAGGGTGAGAGACCCTGTGTATGGTTGTGTTGGAGCCATATCTTACCTTCAAAACCAGGTCTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACATGAACCTGTAATACCAAATCCAGAAATGGACTTAGATCACAAATCCTACCTTCTCCAAAATGACCTCCCTCAATACCTCAACTTTGCATCTTCAAGCAATGTAATTCATGATTCTCTCTCAAGAGAGAGCATATTTGGACATGACGTGGTTTCTTGA 498 0.4478 MAGNSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQVELPVHQRADAVTSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPVIPNPEMDLDHKSYLLQNDLPQYLNFASSSNVIHDSLSRESIFGHDVVS. 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02056 165 Coils Coil 86 106 - -
Seca6g02056 165 ProSiteProfiles LOB domain profile. 5 107 IPR004883 -
Seca6g02056 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 122 - -
Seca6g02056 165 Pfam Lateral organ boundaries (LOB) domain 6 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02056 Seca-Chr6 79983593 79984596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02056 3 132 AS2 family AT2G30130 83.582 1.85e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca6g02056 LOB 5.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02056 - - gmx:121173085 302.753