Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g02053 | ATGGATTCCGACTTCGCCAACAAAGCGTTAACGAGCACGCGTTTTTCCGAGCTGAAGCCGCCACTTTCTGACCCGGTTCTCCAAGCCCTATCGGACTCTGGGTTCGAGTTCTGCACACCGGTTCAAGCCGCCACGATTCCTTTGCTATGCAGCTTCAAGGACGTGGCCGTAGACGCCGCCACCGGTTCAGGAAAAACCCTAGCTTTTGTTGTTCCGCTTGTTGAGATTCTTCGCCGCTCCTCTTCTAATCCCAAGCCTCACCAGGTACTAGGAATAATTATATCTCCTACGAGAGAGCTATCGTCCCAAATATATCATGTTGCACAACCTTTCATTTCAACTTTAGTGAATGTTAAGTCCATGCTCCTCGTTGGTGGGGTAGAAGTAAAAGCAGACATGAAGAAAATAGAGGAAGAAGGAGCAAATATATTGATTGGCACTCCTGGGCGGCTATATGACATAATGAATCGGATGGATGTCTTGGATTTTAAAAACCTTGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGGTTCCAGAAGCAGATAACATCCATTATATCTCAATTGCCTAAACTTCGTAGAACCGGTTTATTCTCCGCTACTCAAACTGAGGCTGTAGAAGAGCTTTCCAAAGCCGGATTGAGGAACCCCGTGAGGGTTGAAGTTCGAGCAGAAACAAAATCAGCAAATGATCCTGCAGCATCAAAACAACTAGAATCTTCGAAGACACCGTCAGGTCTTCATATTGAGTCACCCTTTTCTTTTATTCATCCGCTTCTTTTCCTTTTGAGTTTGCAGTACTTGGAATGTGAGGCAGATAAGAAGCCATCGCAGCTAATAGATATCCTCATTAAGAACCACTCAAAAAAAATTATAATATATTTCATGACCTGTGCCTGTGTTGACTATTGGGGAGTTGTCCTTCCCCGCCTTTCTGTTTTGAAAGGCCTCTCCTTGATCCCCCTTCATGGAAAGATGAAGCAGACTGTCAGGGAGAAAGCACTAGCTTCATTTACATCCCTTTCAAATGGAATTCTTCTATGTACGGATGTTGCAGCACGTGGACTTGACATACCGGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCATACATAGAGTTGGACGAACCGCTCGGTTGGGTAAGCAAGGACATGCAGTTGTCTTCTTATTGCCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAGTTCCTCTTCAGGAGAGAACATGCTCCGATGATGTGTCTGATGTTGTTCCTCAGATTCGTTCTGCTGCGAAAAAAGACCGTGATGTCATGGAGAAGGGAGTCAGAGCATTTGTTTCTTACATCCGTGCTTATAAAGAGCATCTCTGCTCTTATATTTTTAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGATATGGCTTACTGCAACTTCCTTTAATGCCAGAGGTAAAACATCACTCACTGTCCACTGAGGGATTTGAACCGGTTGAAGATATCAATTTGGAGGATATTAAGTACAGGGATAAATCACGACAGAAACAGAGGAAGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTCAAAAACCAAACAAAACCCCAAATGCACCTACTGTCATGAGGAAGAAAACGGCTCGACAGAGACGTGCTCAGCAGACAATTGAAGATGAGGAAGAATTGATGCAAGAATACCGCTTGTTGAAGAAATTGAAAAAAGGGGCCATAGATGAAGATGAATATGCTAAGTTGACAGGCACTGAGGAATTACTTTGA | 1818 | 0.4334 | MDSDFANKALTSTRFSELKPPLSDPVLQALSDSGFEFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSSSNPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNVKSMLLVGGVEVKADMKKIEEEGANILIGTPGRLYDIMNRMDVLDFKNLEILILDEADRLLDMGFQKQITSIISQLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAETKSANDPAASKQLESSKTPSGLHIESPFSFIHPLLFLLSLQYLECEADKKPSQLIDILIKNHSKKIIIYFMTCACVDYWGVVLPRLSVLKGLSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERTCSDDVSDVVPQIRSAAKKDRDVMEKGVRAFVSYIRAYKEHLCSYIFRWKELEIGKLAMGYGLLQLPLMPEVKHHSLSTEGFEPVEDINLEDIKYRDKSRQKQRKKNLQAKKEAKEKEPKPQKPNKTPNAPTVMRKKTARQRRAQQTIEDEEELMQEYRLLKKLKKGAIDEDEYAKLTGTEELL. | 606 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g02053 | 605 | Coils | Coil | 555 | 582 | - | - | |
| Seca6g02053 | 605 | PANTHER | RNA HELICASE | 11 | 534 | - | - | |
| Seca6g02053 | 605 | Gene3D | - | 3 | 227 | IPR027417 | - | |
| Seca6g02053 | 605 | Coils | Coil | 519 | 539 | - | - | |
| Seca6g02053 | 605 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 90 | 410 | IPR027417 | - | |
| Seca6g02053 | 605 | Pfam | DEAD/DEAH box helicase | 39 | 213 | IPR011545 | GO:0003676|GO:0005524 | |
| Seca6g02053 | 605 | SMART | DUF4217_3 | 429 | 492 | IPR025313 | - | |
| Seca6g02053 | 605 | Pfam | Domain of unknown function (DUF4217) | 432 | 489 | IPR025313 | - | |
| Seca6g02053 | 605 | CDD | DEADc_DDX55 | 26 | 224 | - | - | |
| Seca6g02053 | 605 | FunFam | RNA helicase | 9 | 227 | - | - | |
| Seca6g02053 | 605 | SMART | ultradead3 | 34 | 254 | IPR014001 | - | |
| Seca6g02053 | 605 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 170 | 178 | IPR000629 | - | |
| Seca6g02053 | 605 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 282 | 438 | IPR001650 | - | |
| Seca6g02053 | 605 | CDD | SF2_C_DEAD | 273 | 400 | - | - | |
| Seca6g02053 | 605 | MobiDBLite | consensus disorder prediction | 530 | 544 | - | - | |
| Seca6g02053 | 605 | MobiDBLite | consensus disorder prediction | 228 | 247 | - | - | |
| Seca6g02053 | 605 | Pfam | Helicase conserved C-terminal domain | 279 | 391 | IPR001650 | - | |
| Seca6g02053 | 605 | Gene3D | - | 270 | 504 | IPR027417 | - | |
| Seca6g02053 | 605 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 46 | 224 | IPR014001 | - | |
| Seca6g02053 | 605 | MobiDBLite | consensus disorder prediction | 514 | 573 | - | - | |
| Seca6g02053 | 605 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 15 | 43 | IPR014014 | GO:0003724 | |
| Seca6g02053 | 605 | SMART | helicmild6 | 306 | 391 | IPR001650 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g02053 | Seca-Chr6 | 79925610 | 79930928 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca6g02053 | 17 | 405 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 28.205 | 3.12e-41 | 152 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g02053 | K14809 | - | gmx:100801482 | 1024.62 |