Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02027 ATGATGGAGAAATCCAATGTGGCTTCAAAATGCTTTGGCCATTACCCTTTTCAGATTTTGCAACTTGGGGTGAGAAATGCAGCAGATTGGCTCAATAACAAGAAAGAAAGATGGAAGATTATTCTGTCTCAGACACACAACAACCCATGTTGTTTGTTACGGTTGTTTCTCCGGTGGTTCTTTTGGGTTCACATTCTTATGCTCCCCATGTGTGTGAAGTCAGGTCTGGGTGAAGATGAGCGTTGGGATGGAGTGGTTGTGACAGAGTCAAATTTCTTAGCACTTCAAGCATTCAAGCAAGAATTGGTTGATCCAAGAGGCTTCTTGCGGAGCTGGAACTGGAATGATAGTGGGTATGGAGCTTGTTCTGGAGGTTGGGTTGGTATTAAGTGTGCTAAGGGACAGGTTATTGTAATCCAGCTTCCATGGAAGGGATTGAAGGGGCAAATCACTGAGAGGATTGGTCAACTTCAGGGTCTTAGGAAGCTTAGTCTTCATGATAACCAAATTGGTGGTTCAATCCCTTCAGCATTGGGACTTCTTCCCAACCTTAGAGGGGTTCAGCTATTTAACAATAGGCTAACAGGGTCTATTCCTCCTTCCTTAGGTTATTGCCCTTTGCTTCAATCTCTTGATCTCAGTAACAATTTGCTCACAGGAACAATCCCTGATAGCATTGCCAATTCCACTAAGCTTTATTGGCTTAACTTAAGCTTTAATTCCTTCTCTGGTTCAATACCAGCTAGCCTAACTCACTCAGTTTCTCTCACATTCCTTTCCCTTCAACATAATAATCTCTCTGGCTCACTTCCTAACTCATGGGGTGGTAGTGTTAAGAATGATTTCTTTCGGCTTCAAAATTTAATCCTAGATCATAACTTCTTCACTGGAAGTATTCCTTCTTCTTTGGGCCGGTTAAGCCAACTCAGAGAGATTTCACTTAGTCATAACAAGTTTAGTGGTACTATACCAAATGAAATAGGAACTCTTTCTAGGCTTAACACATTAGACTTTTCTAATAATGCCTTGAATGGGAGCTTGCCTCATACCCTTTCTAATTTAACATCACTTACTGTGCTGAATGCTGATAACAACCACCTTGACAATCAAATTCCAGAAGCTTTAGGCAGATTACATAATCTTTCTGTTCTGATTTTGAGTAGAAACCAATTTAGAGGTCATATTCCTGCAAGTATTGCAAACATCTCCACGCTTAAGCAGCTTGACTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTGACACTGAACATAGTCTTAATCTCTTCAATGTTTCTTACAATAACCTCTCAGGTCCTGTTCCTACTCCACTTTCCAAGAAATTTAACTCTAGCTCATTTGTGGGAAATATTCAACTATGTGGGTACAGTCCTTCAACCCCATGTCCTTCACTAGCTCCATCAGAAGGGGTCATTGCTTTACCTCCTGAAATGTCAAAACACCAACATCATAGGAAACTAAGTACCAAAGACATAATTCTCATAGCAGCAGGATCTCTCCTCATAGTTCTTGTAACACTTTGTTGCATCCTGCTCTTTTGTCTGATCAGAAGAAGAGCAACATCAAAGGCAGAAAATGGCCGAGCCACGAGTAGAGCTGCTGCTATGAGCACAGAAAAAGGAGTCCCTCCTGTTGCTGCTGGTGAGGTTGAAGCAAGTGGTGAGGCAGGAGGGAAACTAGTCCATTTTGATGGAGCAATAGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTACATTGGAGGATGGAAGTCAAGTTGCTGTAAAGAGACTGAGGGAAAAGATCACTAAAAGTCAGAGAGAATTTGAATCAGAAGTTAGTGTTCTAGGGAAAATTAGACACCCAAATCTTTTGGCTCTAAGGGCCTATTATGTAGGACCTAAAGGGGAAAAGCTTCTGGTTTTTGATTACATGCCTAAAGGAAGTCTTGCTTCCTTCCTACATGGTAGTGGACCTGGAACAGACATTGATTGGCCAACAAGGATGAAAATAGCACAGGACATGGCTCGTGGCTTGTTGTACCTTCATTCCCAAGAGAACATTATACATGGGAACCTTACATCAAGCAATGTCTTGCTTGATGAGAACACAGATGTTAAAATTGCAGATTTTGGTCTTTCTCGGTTGATGACACCTGCTGCTAATTCTAATGTGATAGCTACTGCTGGAGCATTAGGCTACAGAGCACCTGAACTCTCTAAGCTTAAGAAAGCCAACACTAAAACTGATATCTACAGTTTTGGTGTTATCTTGTTAGAACTCCTAACTAGGAAATCACCTGGGGTGCCTATGAATGGCTTAGATTTACCTCAGTGGGTTGCTTCTATTGTCAAAGAGGAGTGGACAAATGAGGTTTTTGATGTGGAGTTGATGAGAGATGCATCAACAACAGTTGGTGATGAGTTGCTAAACACATTGAAACTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCAAGACCAGAAGTTCAGCAAGTGCTTCAGCAGCTAGAAGAGATTAGACCAGAGAGATCAGTCAGTTCTGGGGACGATTTTAACACCATGTAG 2619 0.417 MMEKSNVASKCFGHYPFQILQLGVRNAADWLNNKKERWKIILSQTHNNPCCLLRLFLRWFFWVHILMLPMCVKSGLGEDERWDGVVVTESNFLALQAFKQELVDPRGFLRSWNWNDSGYGACSGGWVGIKCAKGQVIVIQLPWKGLKGQITERIGQLQGLRKLSLHDNQIGGSIPSALGLLPNLRGVQLFNNRLTGSIPPSLGYCPLLQSLDLSNNLLTGTIPDSIANSTKLYWLNLSFNSFSGSIPASLTHSVSLTFLSLQHNNLSGSLPNSWGGSVKNDFFRLQNLILDHNFFTGSIPSSLGRLSQLREISLSHNKFSGTIPNEIGTLSRLNTLDFSNNALNGSLPHTLSNLTSLTVLNADNNHLDNQIPEALGRLHNLSVLILSRNQFRGHIPASIANISTLKQLDLSLNNLSGEIPVSFDTEHSLNLFNVSYNNLSGPVPTPLSKKFNSSSFVGNIQLCGYSPSTPCPSLAPSEGVIALPPEMSKHQHHRKLSTKDIILIAAGSLLIVLVTLCCILLFCLIRRRATSKAENGRATSRAAAMSTEKGVPPVAAGEVEASGEAGGKLVHFDGAIAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQVAVKRLREKITKSQREFESEVSVLGKIRHPNLLALRAYYVGPKGEKLLVFDYMPKGSLASFLHGSGPGTDIDWPTRMKIAQDMARGLLYLHSQENIIHGNLTSSNVLLDENTDVKIADFGLSRLMTPAANSNVIATAGALGYRAPELSKLKKANTKTDIYSFGVILLELLTRKSPGVPMNGLDLPQWVASIVKEEWTNEVFDVELMRDASTTVGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPERSVSSGDDFNTM. 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02027 872 ProSiteProfiles Protein kinase domain profile. 585 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02027 872 FunFam Pollen receptor-like kinase 1 662 868 - -
Seca6g02027 872 SUPERFAMILY L domain-like 127 473 - -
Seca6g02027 872 CDD STKc_IRAK 591 857 - -
Seca6g02027 872 Pfam Protein tyrosine and serine/threonine kinase 588 854 IPR001245 GO:0004672|GO:0006468
Seca6g02027 872 SMART LRR_typ_2 157 180 IPR003591 -
Seca6g02027 872 SMART LRR_typ_2 354 378 IPR003591 -
Seca6g02027 872 SMART LRR_typ_2 306 328 IPR003591 -
Seca6g02027 872 SMART LRR_typ_2 181 205 IPR003591 -
Seca6g02027 872 SMART LRR_typ_2 330 353 IPR003591 -
Seca6g02027 872 SMART LRR_typ_2 206 229 IPR003591 -
Seca6g02027 872 SMART LRR_typ_2 254 276 IPR003591 -
Seca6g02027 872 FunFam Leucine-rich repeat receptor-like kinase 90 201 - -
Seca6g02027 872 Gene3D Transferase(Phosphotransferase) domain 1 663 870 - -
Seca6g02027 872 FunFam Leucine-rich repeat receptor-like protein kinase 570 661 - -
Seca6g02027 872 Gene3D Ribonuclease Inhibitor 248 346 IPR032675 -
Seca6g02027 872 Gene3D Ribonuclease Inhibitor 89 247 IPR032675 -
Seca6g02027 872 PRINTS Leucine-rich repeat signature 330 343 - -
Seca6g02027 872 PRINTS Leucine-rich repeat signature 208 221 - -
Seca6g02027 872 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 284 857 - -
Seca6g02027 872 SUPERFAMILY Protein kinase-like (PK-like) 589 855 IPR011009 -
Seca6g02027 872 Gene3D Phosphorylase Kinase; domain 1 591 662 - -
Seca6g02027 872 Pfam Leucine rich repeat 207 266 IPR001611 GO:0005515
Seca6g02027 872 FunFam Leucine-rich repeat receptor protein kinase EMS1 202 279 - -
Seca6g02027 872 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 280 474 - -
Seca6g02027 872 Gene3D Ribonuclease Inhibitor 347 473 IPR032675 -
Seca6g02027 872 Pfam Leucine rich repeat N-terminal domain 93 131 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02027 Seca-Chr6 79507285 79510221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02027 82 859 Receptor kinase-like Gene Family AT3G51740 64.450 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca6g02027 PK_Tyr_Ser-Thr 5.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02027 - - aprc:113851294 1372.45