Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02012 ATGAGGGTGGAGGGAACTTTGCCCATAAATCCTTGGTATATTGGTGGTCCTGTCATCAAGGGATTTGGTCGTGGCTCGAAGGTACTGGGGATCCCCACAGGTGGCGCAGTAGAGTGGGAAGAGATTGAAGAAAAACGGTGGCATGCCTTAGATTACTACCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCCCATAATGTTATGATAGATTATGAATTACGGAAACTTCGCTTGATGATGCTTTTTCAGCAGTATGTAACTGCAACATTTTTCTTCAGGTACTGCCCCTAG 294 0.449 MRVEGTLPINPWYIGGPVIKGFGRGSKVLGIPTGGAVEWEEIEEKRWHALDYYHSQGIMHRDVKPHNVMIDYELRKLRLMMLFQQYVTATFFFRYCP. 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02012 97 Pfam Riboflavin kinase 10 34 IPR015865 GO:0008531|GO:0009231
Seca6g02012 97 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02012 97 Pfam Protein kinase domain 47 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g02012 97 PANTHER CASEIN KINASE II SUBUNIT ALPHA 49 80 IPR045216 GO:0004674|GO:0006468
Seca6g02012 97 SUPERFAMILY Protein kinase-like (PK-like) 48 77 IPR011009 -
Seca6g02012 97 ProSitePatterns Serine/Threonine protein kinases active-site signature. 58 70 IPR008271 GO:0004672|GO:0006468
Seca6g02012 97 SUPERFAMILY Riboflavin kinase-like 6 33 IPR023465 GO:0008531|GO:0009231
Seca6g02012 97 Gene3D Transferase(Phosphotransferase) domain 1 49 80 - -
Seca6g02012 97 Gene3D - 1 48 IPR023465 GO:0008531|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02012 Seca-Chr6 79244757 79248214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02012 40 71 CBL-interacting serine-threonine protein kinases AT2G26980 45.946 2.20e-06 42.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Seca6g02012 Pkinase 1.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02012 K20884 - pda:103702887 71.2478