Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02002 ATGAGTATGGTTTCTAGAGAGCAAAAGAGAGGAGCACTGCATGAGAAGCTGCAACTTTTGCGTTCTATTACCAACTCTCATGCTCTAAACAAAACATCGATCATAATCGATGCATCAAAGTATATTGAAGGACTAAAGCAAAAGGTTGAAAGACTAAATCAAGATATAGCCAATGCACAAACTTCAAGTCATGATGATGACCAAAATACTACTTTGCCAATGCAGGTTACGGTAGAAGGCGTAGAAAAGGGATTTGTAATAAATGTTTATTCAGAAAGGAGTTGCCCGGGTCTGCTTGTTTCCATATTGGAGTCCTTTGAAGAGATGGGTCTTAATGTGGTAGAAGCTAGGGTTACTTGTACCGACACTTTCCGATTTCAAGCTGTTGGAGGAGAAAATGACGAAGAGGGTGAAAGTATTGATGCACAAGCTGTGAAACTGGCAATGGGACAAGCAATAAAGAACTGGAGCCAAAGTACCCATCAAAAGTAA 492 0.4004 MSMVSREQKRGALHEKLQLLRSITNSHALNKTSIIIDASKYIEGLKQKVERLNQDIANAQTSSHDDDQNTTLPMQVTVEGVEKGFVINVYSERSCPGLLVSILESFEEMGLNVVEARVTCTDTFRFQAVGGENDEEGESIDAQAVKLAMGQAIKNWSQSTHQK. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02002 163 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 158 - -
Seca6g02002 163 Coils Coil 35 62 - -
Seca6g02002 163 CDD ACT_UUR-ACR-like 86 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02002 Seca-Chr6 79077159 79079628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02002 13 149 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 27.517 2.59e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02002 - - gmx:100814138 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00821 8 10901777 10904287 Seca6g02002 6 79077159 79079628 ECH
Seca4g10908 4 246685178 246687254 Seca6g02002 6 79077159 79079628 ECH
Seca8g01425 8 24208227 24209666 Seca6g02002 6 79077159 79079628 ECH
Seca6g02002 6 79077159 79079628 Seca6g02002 6 79077159 79079628 ECH
Seca8g00821 8 10901777 10904287 Seca6g02002 6 79077159 79079628 PCT