Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01992 ATGGCTTCTTACTACATCCTCCTGTTTGTTCTTGTTGCTGCCTCTGCACTTTCTGAAGCAGATGCCAAAAAGAAGTTATCTACAGACTTCTACTCTAGCAGCTGCCCGGAACTGTTGCCTATAGTGAATAAAGGAGTCATAAAAGCCATTAAAAATGAAACTCGCCTAGGAGCTTCCTTACTTCGATTGCATTTCCATGATTGCTTTGTAAACGGCTGTGATGCATCAATACTATTGGATGATACAAGCAGTTTCATAGGAGAAAAAACGGCAGCACCTAACAATAATTCAGTTAGAGGATTCAACGTGATCGATGACATTAAAGCCAAGTTGGAGAAAGCATGCCCTGGGGTTGTGTCCTGTGCTGATATTCTTGCTCTGGCTGCTCGAGACTCTGTGGTTTATCTAGGGGGGCCTTCATGGAAAGTAGGCTTGGGAAGAAGGGACTCTACCACAGCTAGCAGAGCTGACGCCAATAATTCCATTCCTGCACCCTTTCTCAATCTAAGTGCTCTCAAAACAAATTTCGCTAACCAGGGCTCTCGGTGA 549 0.4444 MASYYILLFVLVAASALSEADAKKKLSTDFYSSSCPELLPIVNKGVIKAIKNETRLGASLLRLHFHDCFVNGCDASILLDDTSSFIGEKTAAPNNNSVRGFNVIDDIKAKLEKACPGVVSCADILALAARDSVVYLGGPSWKVGLGRRDSTTASRADANNSIPAPFLNLSALKTNFANQGSR. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01992 182 Gene3D Peroxidase, domain 2 163 180 - -
Seca6g01992 182 PANTHER PEROXIDASE 72-RELATED 19 180 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g01992 182 SUPERFAMILY Heme-dependent peroxidases 26 180 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca6g01992 182 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Seca6g01992 182 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g01992 182 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g01992 182 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g01992 182 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g01992 182 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca6g01992 182 ProSiteProfiles Plant heme peroxidase family profile. 25 182 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g01992 182 Pfam Peroxidase 44 180 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g01992 182 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g01992 182 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g01992 182 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca6g01992 182 Gene3D - 29 162 - -
Seca6g01992 182 FunFam Peroxidase 29 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01992 Seca-Chr6 78942531 78943330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01992 23 180 Peroxidase AT5G05340 66.456 1.78e-73 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01992 K00430 - gmx:100793973 263.077