Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01989 ATGGAGAAAAGGGGGAATGTATTGATGCAGAAGTATGAGTTTGGCAGACTATTAGGCCAAGGGAACTTTGCAAAGGTTTACCATGCAAGGGACCTAAGAACTGGTGACAGTGTTGCCATTAAGGTTATTGACAAGGAGAAAGTCCTAAAAATTGGGCTGGTGGATCAAACCAAGAGAGAGATATCTATTATGAGACTGGTTAAACATCCAAATGTTTTGCAGCTTTATGAGGTATTGGCCACCAAAACCAAGATTTACTTCATCATAGAATATGCCAAAGGGGGTGAACTTTTCAACAAGGTAGCTAAAGGTAGACTTCCTGAGGACATGGCAAGGAAGTACTTTCAACAATTGATCAGTGCTGTTGATTTTTGCCACAGCAGGGGTGTTTATCACAGGGATTTGAAGCCAGAGAATTTGCTTTTGGATGAGAATGGAGTTCTCAAAGTAGCAGATTTTGGATTATGTGCACTTGTTGAATCTCATCGCCAAGGCAACATGCTGCATACAGTTTGTGGAACTCCTGCATATGTAGCTCCTGAGGTTATAAGTAGAAAGGGTTATGATGGAGCAAAAGCTGATGTTTGGTCTTGTGGGGTGATCTTATATGTTCTTTTGGCTGGTCATTTGCCATTCTATGATTTGAACCTTATGGCACTGTACAGGAAAATAGGCAAAGCAGAATACAAATGTCCAAATTGGTTTTCATTTGAAGTGCGCAGACTATTAGCAAGAATCCTTGACCCCAACCCTGATTCTAGGATTTCCACAGCTAAAGTTTTGGAAAATTCATGGTTCAGAAAAGGACTCAACTCCAAATCTGTTCAATTGAAAAGAGAGGTTGCAAATGTGGCTTCAGTTGATTCTGATAAAGTTTTTGATTTGTGTGAGAATGGAAGTGGTGCTGCTCTTGAGGCACATCAAGCATTGGTTATACCAACAAATTTAAATGCTTTTGATATAATTTCTCTGTCTGCTGGGCTTGACTTGTCAGGCCTTTTTCCAAGCAATGAGGAACAAGAAGATATCAAATTTACATCCATGAGCTCTGCCTCATCTATCATGTCTACAATGGAGGATATTGCTCACACTCTGAAGATGAAGATAACTAAGAAGGATGGGGGGTTGTTGAAACTGGAGAGATCCAGGGAAGGTAGAAAAGGGCCACTTTCAATTGATACTGAAATATTTGAGTTCACCCCATCTTTCCATTTGGTTGAGATGAAGAAAACCTCTGGTGATGCATTAGAATACCAAAAGATACTGAAAGAGGATATAAGACCAGCTCTCAAAGATATTGTATGGAATTGGCAAGGTGAGCAGCAACAGCAGTAG 1335 0.4022 MEKRGNVLMQKYEFGRLLGQGNFAKVYHARDLRTGDSVAIKVIDKEKVLKIGLVDQTKREISIMRLVKHPNVLQLYEVLATKTKIYFIIEYAKGGELFNKVAKGRLPEDMARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDENGVLKVADFGLCALVESHRQGNMLHTVCGTPAYVAPEVISRKGYDGAKADVWSCGVILYVLLAGHLPFYDLNLMALYRKIGKAEYKCPNWFSFEVRRLLARILDPNPDSRISTAKVLENSWFRKGLNSKSVQLKREVANVASVDSDKVFDLCENGSGAALEAHQALVIPTNLNAFDIISLSAGLDLSGLFPSNEEQEDIKFTSMSSASSIMSTMEDIAHTLKMKITKKDGGLLKLERSREGRKGPLSIDTEIFEFTPSFHLVEMKKTSGDALEYQKILKEDIRPALKDIVWNWQGEQQQQ. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01989 444 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01989 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Seca6g01989 444 Pfam NAF domain 313 371 IPR004041 GO:0007165
Seca6g01989 444 SUPERFAMILY Protein kinase-like (PK-like) 8 283 IPR011009 -
Seca6g01989 444 Gene3D Transferase(Phosphotransferase) domain 1 3 316 - -
Seca6g01989 444 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01989 444 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Seca6g01989 444 FunFam Non-specific serine/threonine protein kinase 6 306 - -
Seca6g01989 444 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Seca6g01989 444 FunFam Non-specific serine/threonine protein kinase 311 435 - -
Seca6g01989 444 CDD CIPK_C 317 431 - -
Seca6g01989 444 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Seca6g01989 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 431 - -
Seca6g01989 444 Gene3D Kinase associated domain 1, KA1 317 436 - -
Seca6g01989 444 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01989 Seca-Chr6 78872380 78874876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01989 1 443 CBL-interacting serine-threonine protein kinases AT5G58380 60.746 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca6g01989 Pkinase 6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01989 K07198 - gmx:100816254 746.888