Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01976 ATGAATTCAACATCCACACAGTTTGTTTCCTCAAGAAGGATGAGTGTGTACGATCCTATCCACCAGATTAGTAGTATGTGGGGGGAAGGGTTTAAAACCAATGGTAATTTAGGTGCACAAATTCCCTTAATTGATGAGGCAGACATGAAGTTTGATAGTCAGTCAGAGGATGCTTCTCATGGTATACTGGGAACACCTAACAAGTATGACCAAGAAGCTCATAAACCTACTGATAAGATACAAAGACGTCTTGCACAGAATCGAGAGGCTGCTCGTAAGAGCCGTCTGCGGAAAAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAACAGGGAATGTATATAGGTGGTGGGTTGGATTCTAATAATCTCAGTTTTGCTGGACCTGTAAATTCAGGAATTACAGCCTTTGAGATGGAGTATGGACTTTGGGTGGACGAGCAAAACAGGCAAATCTCAGAAGTGAGAAATGCTTTAAATGCTCATATTGGTGACATAGAGCTTAGGATTCTGGTAGATGGTATGATGAACCACTATATTAAAATCTTTCGCCTGAAATCTGCAGCTGCAAAAGCAGATGTTTTCTATGTCATGTCTGGAATGTGGAAAACAACAGCAGAAAGATTTTTCTTGTGGATTGGAGGCTTTCGGCCCTCCGAGCTTCTAAAGGTTCTTGGTCCAATGATTGAACCCTTGACAGAGAAACAACGGTTGGATATTGAAAACCTTGGACAATCATGTCAGCAAGCAGAAGATGCCCTTTCACAAGGAATGGACAAACTCCGGCAAACACTTGCTGATAGTGTAGCAGCTGGACAATTCGTTGAAGGAACTTATATTCCACAAATGGCATCTGCAATGGAGAAGTTGGAAGCTCTGGTAAGCTTTGTGAACCAGGCTGATCATCTTCGGCAGGAAACATTGCAGCAAATGTCTAGAATACTTACAATCCGTCAGTCAGCACGATGCTTGCTTGCTTTGGGGGAATATTTCCAACGCCTGAGGGCTTTAAGCTCACTATGGTCTAATCGACCCCGTGAACCTGCTTAG 1092 0.4322 MNSTSTQFVSSRRMSVYDPIHQISSMWGEGFKTNGNLGAQIPLIDEADMKFDSQSEDASHGILGTPNKYDQEAHKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNNLSFAGPVNSGITAFEMEYGLWVDEQNRQISEVRNALNAHIGDIELRILVDGMMNHYIKIFRLKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPMIEPLTEKQRLDIENLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFVEGTYIPQMASAMEKLEALVSFVNQADHLRQETLQQMSRILTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01976 363 CDD bZIP_HBP1b-like 79 131 - -
Seca6g01976 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 77 121 IPR004827 GO:0003700|GO:0006355
Seca6g01976 363 FunFam BZIP family transcription factor 78 127 - -
Seca6g01976 363 Pfam bZIP transcription factor 77 113 IPR004827 GO:0003700|GO:0006355
Seca6g01976 363 Coils Coil 98 125 - -
Seca6g01976 363 Gene3D - 78 127 - -
Seca6g01976 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Seca6g01976 363 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Seca6g01976 363 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
Seca6g01976 363 SMART brlzneu 75 146 IPR004827 GO:0003700|GO:0006355
Seca6g01976 363 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Seca6g01976 363 SUPERFAMILY Leucine zipper domain 79 121 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01976 Seca-Chr6 78641678 78647984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01976 1 363 Calmodulin-binding Proteins AT5G10030 70.137 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca6g01976 DOG1 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01976 K14431 - gmx:100793353 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01976 6 78641678 78647984 Seca6g01976 6 78641678 78647984 ECH
Seca12g06181 12 153711678 153717230 Seca6g01976 6 78641678 78647984 PCT