Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01970 ATGGCTGATCACTCAGATTCTTCTCCTCTTGTCCCTCCTCTCCCACTCTCTGACCCTTCCGAGATCGACCTTGAAGCCGGTCCCTCCGAACAAATCCAATGCCGAATTTGTCTTGAAACTGATGGTAGAGATTTCATAGCTCCTTGTAAGTGCAAAGGTACATCGAAATATGTACATCGAGAATGTTTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCTTATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACCTTGAAGTTTCGTTTTTTTGTCACCAGAGACATTTTGTTTATTTTCATGGCTGTCCAGCTTGTCATTGCCTCGCTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAACTGAGCTTTTACTACATATGTGGAGCTCTTTTGTTTTTTGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACTTGTTATGATCAAAGAGTTCGCAATGATTTGGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCAGGAGTTTGTGCAGACTGTCATTTGCCAGGTACCCTTTGTATGTGGACTGATTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCAACAGAATGTGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTACCGTTATTATTCATAATGGCTTTGATTGTTCTTGGACTTTTTACTGTAATTGGGATATTTTACAGCGTATTGGTGGCTACTATGGTAGGTCAACGGATATGGCAACGTCACTATCACATACTTGCAAAAAGGATGTTAACAAAGGTGTGA 870 0.4345 MADHSDSSPLVPPLPLSDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFMAVQLVIASLAYLVYLIDGYQQYWLRLLWGFDSELSFYYICGALLFFALLGLSGCFITCYDQRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKV. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01970 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 96 IPR013083 -
Seca6g01970 289 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Seca6g01970 289 CDD RING_CH-C4HC3_MARCH 34 82 - -
Seca6g01970 289 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Seca6g01970 289 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 288 - -
Seca6g01970 289 SMART ringv_2 33 82 IPR011016 GO:0008270
Seca6g01970 289 SUPERFAMILY RING/U-box 29 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01970 Seca-Chr6 78560359 78565544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01970 1 288 C3H Transcription Factor Family AT2G22120 84.775 9.69e-180 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01970 - - gmx:100791777 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01970 6 78560359 78565544 Seca6g01970 6 78560359 78565544 ECH
Seca6g01970 6 78560359 78565544 Seca6g01970 6 78560359 78565544 PCT