Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01967 ATGGCATCTCTCTCTAGTCTCTTCAAATACCTCTGTTGCAAGATGATAATCCTATTAGCAGTCCTCCTAATAGAACTCATCATCCTCTTTCGGAAACTAACTTCAGATACACGTCCAATCACCACACAGCAATACCTCAAATTCATTGAACAGAAGAACCCCACCATTTGCTACACCAAAAAGGTACTGAAACTTGAAGAGCAAGTGGAGTGTACGGTGTGCTTATCTGAATTCGAGGAAGGAGATAAGGTGAGGAAGTTGAAGTGCAAACACACGTTTCACAGAGATTGTTTGGACACGTGGTTGCAAGAATATTGGGCTACATGTCCACTTTGTAGGATACAACTGTTGCCATATGATATTGTGTCCAAGCATCGTCTTCGGAATGTCGAAGGTTTTAATGGGAATGATGAGCACTTTCCCTTTCTGTTATCCGCATTAAGTGGTGGTAATAGAATAAGTAACTTCATCTTTTAG 477 0.4088 MASLSSLFKYLCCKMIILLAVLLIELIILFRKLTSDTRPITTQQYLKFIEQKNPTICYTKKVLKLEEQVECTVCLSEFEEGDKVRKLKCKHTFHRDCLDTWLQEYWATCPLCRIQLLPYDIVSKHRLRNVEGFNGNDEHFPFLLSALSGGNRISNFIF. 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01967 158 SUPERFAMILY RING/U-box 58 119 - -
Seca6g01967 158 Pfam Ring finger domain 70 113 IPR001841 -
Seca6g01967 158 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Seca6g01967 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 118 IPR013083 -
Seca6g01967 158 FunFam Putative RING zinc finger domain superfamily protein 40 118 - -
Seca6g01967 158 PANTHER - 1 151 - -
Seca6g01967 158 SMART ring_2 71 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01967 Seca-Chr6 78496936 78497412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01967 70 124 C3H Transcription Factor Family AT1G15100 54.545 1.34e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01967 K16282 - gmx:102661897 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06177 12 153671475 153671969 Seca6g01967 6 78496936 78497412 PCT