Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01959 ATGGGATTGAGGGAACGTACCAGCAGCAGCATGGAAGATCCAGATGGGACATTAGCAAGTGTTGCTCAATGCATTGAGCAGCTACGGCAGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCCTTGAAACAGTTATTGGACCTTATTGATATGCGTGAAAATGCTTTCAGTGCTGTTGGATCTCACTCTCAAGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGCTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCTCTCCTTGGTCTACTCAAGTCTAGTTCTGCTGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTTCTGTCTCTCAAGGTGGTGCCAAAGATCACGTTGGATCAAAAATATTTTCAACTGAAGGAGTTGTTCCGGTTCTCTGGGAGCAGCTGCATAAGGGCCTGAAGAATGGAAGTGTAGTCGATAGTTTATTGACTGGAGCATTGAAAAATCTCTCCAGCAGTACTGAGAGATTCTGGAATGCCACAATACAAGCTGGAGGAGTCGACATATTAGTGAAGTTGCTAACAACAGGGCAGTCTAGCACCTTAGCTAATGTGTGCTTTTTACTTGCCTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGGTATTGACAGCAGAGGCAACAAAACAACTTCTCAAACTTTTAGGCCCTGGTAATGATGCCCCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTGCCCAATGCAAAGATGCAAGGAAAGAGATAGCCAATTCTAATGGCATTCCTGCTCTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAATCATGTTCCTCACCTACCCAAATCGCCGACACATTGGGGGCTTTAGCTTCCGCTCTTATGATATATGATGACAAGGCAGAATCTACTAGAGCATCAGATCCTTTGGTAGTTGAGCAGACACTACTCAAGCAATTTAAACCTCACTTGCCCTTCCTTGTGCAGGAAAGGACCATTGAAGCCCTAGCTAGTTTGTATGGAAATCCTATACTGTCACTTAAACTTGCAAATTCTGATGCAAAGCGGTTGCTTGTTGGTTTAATAACAATGGCTGCTAATGAAGTGCAAGATGAGCTTCTAAAAGCTCTCTTGACACTATGCAATAGTGAATGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTAGGGCTTTCATCAGAACAGCAGCAAGAATGTGCTGTTGCCCTGCTTTGTCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCAGCATCAATCCTTAGGAACCTATGTGATCATAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTATTATGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCAAAGACCTTGAATCACTTAATTCATAAATCTGACACAGCGACTATCAGTCAGCTTACAGCATTGTTGACTAGTTATCTACCTGAATCAAAGGTTTACGTTTTAGATGCTTTGAGAAGTATGCTTTCTGTTGTTGCCCTTAGTGATCTTCTACGTGAAGGTAGTGCTGCCAGTGATGCAATTGATACAATGATAAAATTATTGAGCTCAACCAAGGAAGAAACTCAGGCAAAGTCTGCGTCAGCTCTGGCAGGAATTTTTGAAATGAGGAAAGATGTGCGTGAAAGCAACATTGCTGTTAAAACTCTTTGGTCATCCATGAAGCTACTTAATGTTGAATCTGAAATTATCTTAATGGAGTCCTCACGCTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGAGGTAGCTTCTATTGCTAGAGATGCATTATCCTCCCTAGTTGCACTAGCTAGCTCTCCAGTTTTGGAAGTGGCGGAGATGGCAACATGTGCTGTGGCTAATCTTATTTTGGATAGTGAAATTGCTGAGAAAGCTGTTACGGAAGAAGTTATCTTGCCTGCTACCAGAGTATTACGGGAAGGCACAATTTCTGGAAAAACACATGCAGCAGCAGCGATTGCTCGCCTCTTACATTCTAGGAAAGTTGATTATGCTGTAAATGATTGTGTGAATCGTGCTGGTACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTTCTATTAATGGACCTGTTGCCAGATCAGAGGCCCTAGAAGCACTTGCCATTTTGTCCAGGTCAGCAGAGACCAGTGCACACAGTAAACCTGCTTGGGCAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTTCTGTCTATTGCTGATTCAACGCCAGTGTTGCAGGATAAAGCTATTGAAATATTATCTCGATTATGTAAGGATCAGCCTTTTGTGTTAGGAGACACTGTTGCTTCTTCCTCTGGATGTATACCTTCAATAGCTAAGAGGATAATTAATTCCGCTTCTACAAATGTAAAGGTCAAAATTGGGGGAGCTGCAGTTCTTATTTGCGCTGCTAAAGTAAATCATCAGAGGCTGGTGGAGGATCTAAATTTCTCAAACTTATGTGCTAATCTTGTTCAGTCTCTTGTTGATATGCTTATTTCTTCACAAGCTACTTTGGGTAATCAGGGTGATGACAACAAGGAAGTCATCAGCATTTGCAGGCATACAGAAGAAGAAGCCAATGATGGTAAATCCAACACTGCTACTGCTATTATATCTGGTGCCAACTTAGCTATATGGTTACTGTGTGTTCTTGCTTGCCATGATGAAAAAAGTAAAATTGCCATAATGGAGGCTGGAGCAATTGAGGTTCTAACTGACAGGATCGCAAATTGTTTCACACAATATAGTCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTATTGTTGGCAATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACTATGAAATCTATACCAGCCCTTGCCAATTTATTGAAGTCAGAGGAAACAGCAAACAGGTATTTTGCTGCACAATCAATATCTAGCCTAGTTTGTAATGGAAGCAGGGGAACACTTCTATCTGTGGCAAATTCTGGGGCGGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCAAATGAGTTTTCTTTGGTGCCATATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGAGCACCATTTTTAGCTCTTGGGATTTTGACTCAGCTTGCCAGAGATTGTCCATCGAATAAACTTGTAATGGCAGAATCTGGGGTTCTAGAGGCACTCACTAAGTATCTTTCACTAGGTCCACAAGATGCAACGGAAGAAGCTGCTACAGATCTGTTGGGAATTCTGTTTAGCAGTGCTGAGATACGGAGGCATGAGTCAGCATTTGGTGCTGTTGCTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGTGCTGCAAAAGCCCTGGAAAGTCTATTCTCTGCTGACCACATTAGCAATGCAGAGACTGCTCGACAAGCTGTTCAACCCTTGGTGGAGATTCTCAATACCGGTTTAGAGAGAGAGCAGCATGCTGCAATTGGTGCATTAGTTAGGTTACTTAGTGAAAACCCTTCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATCCTTTCATCAGATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGAATTCGGTCCACAATGGCTGCTGCGCGCTGTGTTGAACCCCTGGTCTCTCTCCTTGTGTCTGAGTTTAGCCCTGCTCAGCATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGATGATGAGCAATTGGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTAATGTATGGTAGGAACTATGTACTTCATGAGGCCATTTCCAGAGCTCTTGTCAAGTTAGGAAAGGACAGGCCTACTTGTAAAATGGAGATGGTGAAAGCTGGAGTCATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGAATATTGACCAATAATGCTAGCATAGCCAAAGGACCATCAGCTGCTAAAGTGGTTGAACCCCTGTTTTTTATGCTGACAAGACAAGAATTTGGGCCTGATGGACAACACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAGCATCCACAATGTCGTGCTGATTACACATTGACTTCTCACCAAGTTATTGAGCCACTCATCCCTTTGCTTGATTCTCCAATATCGGCAGTGCAACAATTGGTTGCTGAACTTCTCTCACATTTGCTTTTAGAAGAACACCTTCAGAAGGATCCAGTGACACAGCAAGTAATTGGTCCTCTTATACGAGTTCTTGGTTCTGGCATACATATATTACAACAGAGAGCTGTAAAGGCCCTAGTCAGTATTGCTACTGTATGGCCAAATGAAATTGCAAGAGAGGGTGGAGTTATTGAAATTTCAAAAGTGATATTGCAAGCTGACCCTTCAATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTTCCTGTTGCTGTTTTGGTAAGGTTGCTTCGGTCTGGCTCAGAGAGCACGGTTATTGGTGCATTAAATGCTCTTCTTGTGTTAGAATGTGATGATGGAACTAGTGCAGAAGCAATGGCTGAAAGCGGTGCCATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGCGAGGATACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCAGTACCTCTTGGACCCCCAAACCCAAGTACAACAAGCAAGGTTATTAGCAACTTTGGCCCTTGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACACCTGATGCAGTTTCAGCTTGCCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTTATAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTACTGGATCTGATAGGTTCAAGTGATCCTGAGACATCTGTTCAGGCTGCAATGTTCATTAAACTTCTCTTTTCAAATCATACTATTCAAGAGTATGCTTCTAGTGAAACTGTCAGAGCAATAACTGCTGCTATTGAAAAGGATTTATGGGCTACTGGAACTGTGAATGATGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGACTGAGAGCAACTGAACCAGCAACACTTACCATTCCACATTTGGTTACATCCTTGAAGACAGGTTCAGAGGCTACTCAGGAAGCTGCCTTGGATACACTTTTTCTGCTCAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTTTCAAGAGCCCAGTCCATAACAGCTGCAGATGCTATTCCTTTGTTACAGTACTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAGTTTTTATTGCAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAACGCGGTAATAATATGAAGCAATCAGTTGGAAACCCGAGTGTTTATTGTAAGCTTACACTTGGAAACACTCCTCCAAGGCAAACGAAGGTGGTCTCGACTGGCCCAAATCCAGAATGGGATGAGAGTTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAACTTCACATTTCTTGCAAAAATAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACGATCCAGATTGATCGGGTGGTGATGCTGGGAGCAGTATCTGGAGAGTACACTCTGTTGCCGGAAAGTAAAAGTGGCCCCTCAAGGAATTTAGAAATAGAATTTCAGTGGTCTAACAATGTCAAGCTTTGA 6345 0.429 MGLRERTSSSMEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLKQLLDLIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFSVSQGGAKDHVGSKIFSTEGVVPVLWEQLHKGLKNGSVVDSLLTGALKNLSSSTERFWNATIQAGGVDILVKLLTTGQSSTLANVCFLLACMMMEDASVCSKVLTAEATKQLLKLLGPGNDAPVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQIADTLGALASALMIYDDKAESTRASDPLVVEQTLLKQFKPHLPFLVQERTIEALASLYGNPILSLKLANSDAKRLLVGLITMAANEVQDELLKALLTLCNSECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSYLPESKVYVLDALRSMLSVVALSDLLREGSAASDAIDTMIKLLSSTKEETQAKSASALAGIFEMRKDVRESNIAVKTLWSSMKLLNVESEIILMESSRCLAAIFLSIKENREVASIARDALSSLVALASSPVLEVAEMATCAVANLILDSEIAEKAVTEEVILPATRVLREGTISGKTHAAAAIARLLHSRKVDYAVNDCVNRAGTVLALVSFLDSSINGPVARSEALEALAILSRSAETSAHSKPAWAVLAEFPKSISPIVLSIADSTPVLQDKAIEILSRLCKDQPFVLGDTVASSSGCIPSIAKRIINSASTNVKVKIGGAAVLICAAKVNHQRLVEDLNFSNLCANLVQSLVDMLISSQATLGNQGDDNKEVISICRHTEEEANDGKSNTATAIISGANLAIWLLCVLACHDEKSKIAIMEAGAIEVLTDRIANCFTQYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEETANRYFAAQSISSLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSNEFSLVPYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGILTQLARDCPSNKLVMAESGVLEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVAQLVAVLRLGGRAARYSAAKALESLFSADHISNAETARQAVQPLVEILNTGLEREQHAAIGALVRLLSENPSRALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAQHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLMYGRNYVLHEAISRALVKLGKDRPTCKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFFMLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQVIEPLIPLLDSPISAVQQLVAELLSHLLLEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIATVWPNEIAREGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEFYLEVPVAVLVRLLRSGSESTVIGALNALLVLECDDGTSAEAMAESGAIEALLELLRSHQCEDTAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQVQQARLLATLALGDLFQNEGLARTPDAVSACRALVNVLEDQPTEEMKVIAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKALNSLFSNFPRLRATEPATLTIPHLVTSLKTGSEATQEAALDTLFLLRQAWSACPAEVSRAQSITAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNNVKL. 2115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01959 2114 SMART arm_5 1441 1481 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 94 134 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 1189 1230 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 691 729 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 1358 1398 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 775 817 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 483 523 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 1144 1187 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 52 93 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 525 565 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 269 318 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 1690 1729 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 1399 1439 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 1526 1567 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 1817 1857 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 1273 1312 IPR000225 GO:0005515
Seca6g01959 2114 SMART arm_5 226 267 IPR000225 GO:0005515
Seca6g01959 2114 SUPERFAMILY ARM repeat 25 350 IPR016024 -
Seca6g01959 2114 SMART C2_3c 1991 2087 IPR000008 -
Seca6g01959 2114 Coils Coil 255 275 - -
Seca6g01959 2114 ProSiteProfiles C2 domain profile. 1971 2088 IPR000008 -
Seca6g01959 2114 Gene3D C2 domain 1990 2113 IPR035892 -
Seca6g01959 2114 Gene3D - 612 778 IPR011989 -
Seca6g01959 2114 Pfam C2 domain 1990 2086 IPR000008 -
Seca6g01959 2114 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1156 1200 IPR000225 GO:0005515
Seca6g01959 2114 Gene3D - 1138 1322 IPR011989 -
Seca6g01959 2114 Gene3D - 1323 1608 IPR011989 -
Seca6g01959 2114 SUPERFAMILY ARM repeat 422 867 IPR016024 -
Seca6g01959 2114 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1340 1574 - -
Seca6g01959 2114 Pfam Armadillo/beta-catenin-like repeat 483 523 IPR000225 GO:0005515
Seca6g01959 2114 Pfam Armadillo/beta-catenin-like repeat 62 92 IPR000225 GO:0005515
Seca6g01959 2114 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1989 2108 IPR035892 -
Seca6g01959 2114 Gene3D - 779 1127 IPR011989 -
Seca6g01959 2114 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1990 2111 - -
Seca6g01959 2114 SUPERFAMILY ARM repeat 1595 1988 IPR016024 -
Seca6g01959 2114 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 5 2110 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Seca6g01959 2114 CDD C2 1992 2082 - -
Seca6g01959 2114 SUPERFAMILY ARM repeat 781 1120 IPR016024 -
Seca6g01959 2114 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 494 536 IPR000225 GO:0005515
Seca6g01959 2114 FunFam Coatomer beta subunit 1576 1989 - -
Seca6g01959 2114 Gene3D - 364 611 IPR011989 -
Seca6g01959 2114 Gene3D - 1614 1989 IPR011989 -
Seca6g01959 2114 Gene3D - 10 363 IPR011989 -
Seca6g01959 2114 SUPERFAMILY ARM repeat 1146 1528 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01959 Seca-Chr6 78074209 78085139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01959 446 578 U-box Gene Family AT2G23140 40.741 3.36e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01959 - - gmx:100816765 3736.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06172 12 153602228 153614004 Seca6g01959 6 78074209 78085139 PCT