Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01953 ATGGCTTCTTCAGCAGTGGAGACCTGCAAATTGGAGGATATGCAGGTGGACATTGAGAAGAACGTAAGGTCTCAGTGGGTGCTTAACGCACCCGAGCCCCCAAGTCCCTGGGAAGTGGTTCTAGATTCTGTGAAGAAAGCCTTCTCGCAGTGTCGAGAAAAGTTTTCCTCTCTCAGAGATCAACCCTGCACCACACTTGTGCTTTCCATTCTGCAGGGGATTTTTCCCATTCTTTCATGGGGTAGAAACTACACTGCAGCCAAATTCAGGAAAGACTTTCTTGCAGGCCTCACTATTGCAAGTCTCTGTATTCCCCAGAGTATTGGGTATGCGACTTTGGCACACCTTGACCCTCAATATGGCCTTTATACGAGTGTTGTACCACCGCTTATCTATGCTGTAATGGGAACTTCGAGAGAGATAGCAATTGGTCCTGTGGCTGTGGTTTCGCTGCTGTTATCCTCAATGATTCAGAAATTAGTAGACCCTGTTAATGATCCAGTCGGTTATACAAAGATGGTTTTTCTTGCTACTCTCTTTGCTGGTATCTTTCAGACTTCCTTTGGACTCTTCAGGCTGGGGTTCCTTGTGGATTTTCTATCGCATGCTGCAATAGTTGGATTTGTAGGAGGAGCAGCGATAGTGATTGGACTTCAACAGTTGAAGGGACTGTTAGGGATCACTCATTTTACGACCAAAACGGACATAATCTCTGTCATCAAAGCTGTCTGGGTAGCAATTCATAATCCTTGGAACCCTCGTAATTTTATCCTCGGATGCTCATTCTTGGTCTTCATCCTAGCCTCTAGGTTTCTGGGTAAAAAGAAGAAGAAGCTGTTCTGGTTGGCATCAATCTCTCCTCTTGTATCTGTTATACTATCAACTCTCTTTGTTTTTCTGACACGAGCTGATAAAAATGGAGTTAAAATTGTGAAACACGTCAAAGGGGGACTCAATCCAATCTCCATCCATCAGTTAGATTTCAACAATCCCTATGTTGGAGAAGTCGCCAAAATTGGATTGGTCATTGCTGTTGTTGCCCTTACTGAATCTGTTGCTGTTGGACGATCTTTTGCATCCATCAAAGGATATCAACTTGATGGAAACAAGGAGATGATGTCAATAGGCTTCACAAATATTATAGGATCTCTCACCTCCTGCTATGTTGCAACTGGTTCATTCTCCCGGACTGCAGTGAATTATGCGGCTGGGTGTGAAAGTTTAATATCAAACATTGTGATGGCTGTGACGGTTTTGATATCACTGTTGTTTTTGACAAAGCTATTGTATTATACCCCAACTGCAATTCTCGCTTCAGTGATCCTCTCTGCACTCCCAGGACTCATAGACTTCCCTGAAGCTTTCAAAATTTGGAAGGTTGATAAGCTTGACTTTCTTGCTACCGCTGGAGCCTTCTTTGGGGTACTCTTTGCATCTGTCGAGATTGGTCTTCTAGTGGCGGTGGTAATATCATTTTCAAAGATCATTCTCATCTCAATTCGACCTGGCACAGAAACTCTTGGAAAACTTCCTGGAACTGATTTGTTCTGTGATGTCTATCAGTATCCTATGGCTGTTAAGATTCCCGGGGTTATGATAATACGTCTCAAGTCTGCGTTGCTTTGCTTTGCAAATGCCAATTTCGTTAGAGAAAGGATCATGAAATGGGTCACTCAGGAAGAATCCGAAGATGACAAGGGAAATTCAAGAAGCACCACTCAACTCGTAATTCTTGACACCTCGAATTTGGTGAACATTGACACCTCCGGGATTGCTTCTCTAGAGGAACTGCAAAAGAGTTTATCTTCACATGGGAAGCAGTTAGCCATTGTCAACCCTAGGTGGCAAGTGATTCACAAGCTAAAGGTGTCCAACTTTGTCAACAAAATAGGTGGTAGAGTCTTTCTTACTGTTGAAGAAGCTGTTGGTTGCAAGAGTGAGTTCTAA 1947 0.4335 MASSAVETCKLEDMQVDIEKNVRSQWVLNAPEPPSPWEVVLDSVKKAFSQCREKFSSLRDQPCTTLVLSILQGIFPILSWGRNYTAAKFRKDFLAGLTIASLCIPQSIGYATLAHLDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKLVDPVNDPVGYTKMVFLATLFAGIFQTSFGLFRLGFLVDFLSHAAIVGFVGGAAIVIGLQQLKGLLGITHFTTKTDIISVIKAVWVAIHNPWNPRNFILGCSFLVFILASRFLGKKKKKLFWLASISPLVSVILSTLFVFLTRADKNGVKIVKHVKGGLNPISIHQLDFNNPYVGEVAKIGLVIAVVALTESVAVGRSFASIKGYQLDGNKEMMSIGFTNIIGSLTSCYVATGSFSRTAVNYAAGCESLISNIVMAVTVLISLLFLTKLLYYTPTAILASVILSALPGLIDFPEAFKIWKVDKLDFLATAGAFFGVLFASVEIGLLVAVVISFSKIILISIRPGTETLGKLPGTDLFCDVYQYPMAVKIPGVMIIRLKSALLCFANANFVRERIMKWVTQEESEDDKGNSRSTTQLVILDTSNLVNIDTSGIASLEELQKSLSSHGKQLAIVNPRWQVIHKLKVSNFVNKIGGRVFLTVEEAVGCKSEF. 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01953 648 Pfam STAS domain 522 641 IPR002645 -
Seca6g01953 648 ProSiteProfiles STAS domain profile. 541 645 IPR002645 -
Seca6g01953 648 SUPERFAMILY SpoIIaa-like 526 642 IPR036513 -
Seca6g01953 648 Gene3D STAS domain 501 646 IPR036513 -
Seca6g01953 648 ProSitePatterns SLC26A transporters signature. 118 139 IPR018045 GO:0008271|GO:0008272
Seca6g01953 648 PANTHER SULFATE TRANSPORTER 63 643 IPR001902 GO:0016020|GO:0055085
Seca6g01953 648 NCBIfam sulfate permease 76 638 IPR001902 GO:0016020|GO:0055085
Seca6g01953 648 FunFam Sulfate transporter 31 501 647 - -
Seca6g01953 648 CDD STAS_SulP_like_sulfate_transporter 522 636 - -
Seca6g01953 648 Pfam Sulfate permease family 89 468 IPR011547 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01953 Seca-Chr6 77892392 77900197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01953 15 642 Inorganic Solute Cotransporters AT5G10180 68.680 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01953 K17469 - gmx:100817831 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01953 6 77892392 77900197 Seca6g01953 6 77892392 77900197 ECH