Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01941 ATGATACCAGATTTCCTAGACCCATGTAGTGAAGAGTTGATGAAAGCACTTGAGCCTTTTATGAAAAGTGATTCATCTTGCACTTCCTCCATAACCTCCTTCTCCTTCTCTTCCCCTTCTCCTTCTTCCACTTACCCTTCACTTTCTTGTTCTTTTCCAAACTTCTCCTTAAAACCATCCAACACCAACATGTTTTCCCATGACCAAAAGGGTTCCAATTCCATCAAGTTGAACCAACTCACCCCATCTCAAATTCTTCAGATTCAAGCTCAAATCCAGATTCGACAACAACAGCAACATCACATCTCTGACATTCTCCAACACCAGAGCCCAAAACATGTTCCCATGAAGAAATCAACAAAGCTCTACCGTGGGGTGAGACAGAGACATTGGGGAAAATGGGTTGCTGAGATCAGACTCCCCAAGAATCGTACACGTCTCTGGCTTGGTACATTTGACACAGCAGAGGAAGCAGCTTTAGCATATGACAACGCAGCGTTTAAGCTAAGGGGTGAACATGCTCGCCTTAATTTCCCTCATCTACGCCACCATGGAGCTCATGTCTATGGTGAGTTTGGGAACTACAAACCTCTACCTTCCACGGTGGATGCAAAGCTCCAAGCAATTTGTCAAAGCTTGCAGCAGGGGAAAACAGAGAAGCTCTGTTCTGTTGTTGATACAAAGCGAGCAAAGGCAAAATTGGAGTTTGATGTGACACAATTCAACAATGAAACAGAGGATTATAAGTCCTTGTCAGATGAATCATCATCTGCTAGTTCGTATTCACCTGAATCTGATATTACTTTCTTGGATTTCTCGGGTTCTAATGAAACAGAGCATATTGGATTGGACTTGGAGAAGTATCCTTCAGTGGAGATTGATTGGGAAGCTATATGA 897 0.4303 MIPDFLDPCSEELMKALEPFMKSDSSCTSSITSFSFSSPSPSSTYPSLSCSFPNFSLKPSNTNMFSHDQKGSNSIKLNQLTPSQILQIQAQIQIRQQQQHHISDILQHQSPKHVPMKKSTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEHARLNFPHLRHHGAHVYGEFGNYKPLPSTVDAKLQAICQSLQQGKTEKLCSVVDTKRAKAKLEFDVTQFNNETEDYKSLSDESSSASSYSPESDITFLDFSGSNETEHIGLDLEKYPSVEIDWEAI. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01941 298 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Seca6g01941 298 FunFam Ethylene-responsive transcription factor 2 121 180 - -
Seca6g01941 298 CDD AP2 121 181 IPR001471 GO:0003700|GO:0006355
Seca6g01941 298 Gene3D AP2/ERF domain 122 180 IPR036955 GO:0003700|GO:0006355
Seca6g01941 298 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Seca6g01941 298 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
Seca6g01941 298 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Seca6g01941 298 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Seca6g01941 298 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Seca6g01941 298 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 11 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01941 Seca-Chr6 77634321 77635304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01941 7 298 AP2-EREBP Transcription Factor Family AT4G39780 52.349 2.04e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca6g01941 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01941 K09286 - gmx:106796800 296.589