Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01911 ATGTCGAATCGGAATCCGACCCGAAAACCTCACCCGCAGGACGATCCAAATAGCACCGCGGACCCTCAGGTTCCGCTTCGGAACCTCTCCCTGGTTCAGACGAAAATGGATTCTCTGCAGCAGTTCCTATCCCAATCTATCAACTCCAACACTCCCCTCACCAAGGATCAGATCACCGTCGTCTCCAACCAGATCGTCTCCGCCATCCACCAGATCGTCGTCAACGGCGCCGCCCTCGTCAATCTCTCCGCCTCCGCCGGAGCCTCCTCTGTCTTCCCGCCGAAGACGCCCAGGCCGGAACCCTCCGCCGCCGCCAAGGTCAAACAGGTTCCCGATTCGAAAGTCAAGCTCGCAGAAGAAGACGAAGACGATGACGCCGTCGAGGACTGCGACAACGACTGCGAAATCGTCGAACTCGACGCCGTGGAATTGCTCGCTGAACACATCCACTTCTGCGAGATTTGCGGGAAAGGTTTCCGGCGTGACGCGAACCTCCGGATGCACATGCGCGCGCACGGGAACCAGTTCAAGACGCCGGAAGCGTTGGCGAAGCCTTCGTCATCGGAGGATGGCAGCGCCGCCGCACGCCGCCGTGTCACGACGCGGTTCTCTTGCCCGTTCGAAGGTTGCAGCCGGAACAAGCTTCACCGGAAATTCAGGCCGTTGAAATCTGTGATTTGCGTGAAGAACCATTTCAAAAGGAGCCACTGCCCGAAGATGTACTCGTGCAATCGGTGCCATAAGAAGAATTTCTCGGTGCTCTCTGACTTGAAGAGCCACATGAGGCACTGTGGAGAGTCCAAGTGGAAGTGCTCGTGTGGGACCACTTTTTCCAGGAAGGACAAGTTGTTCGGACACATAGCCCTGTTTGAGGGTCACATGCCTGCTCTTGCGTTGGAGGACGAGGAGAAAGGGAAGCAAGTGGTGATGGTGGAGGAAAGTGAAGATCCCAAAAGTGAATTGGGTAGTTGTTTTGTGAATGATGATGGATTGCCCGAAGAGTTCTTTGATGATTTTGGTTCCATTGATAACTACTGTTTGCAGGAAGTCTTGGGGTTTTCTAGTAATTTCTCATGA 1077 0.5478 MSNRNPTRKPHPQDDPNSTADPQVPLRNLSLVQTKMDSLQQFLSQSINSNTPLTKDQITVVSNQIVSAIHQIVVNGAALVNLSASAGASSVFPPKTPRPEPSAAAKVKQVPDSKVKLAEEDEDDDAVEDCDNDCEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPSSSEDGSAAARRRVTTRFSCPFEGCSRNKLHRKFRPLKSVICVKNHFKRSHCPKMYSCNRCHKKNFSVLSDLKSHMRHCGESKWKCSCGTTFSRKDKLFGHIALFEGHMPALALEDEEKGKQVVMVEESEDPKSELGSCFVNDDGLPEEFFDDFGSIDNYCLQEVLGFSSNFS. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01911 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Seca6g01911 358 SMART c2h2final6 241 263 IPR013087 -
Seca6g01911 358 SMART c2h2final6 203 236 IPR013087 -
Seca6g01911 358 SMART c2h2final6 150 172 IPR013087 -
Seca6g01911 358 MobiDBLite consensus disorder prediction 88 112 - -
Seca6g01911 358 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 113 314 IPR044300 GO:0010044|GO:0010447
Seca6g01911 358 Gene3D Classic Zinc Finger 150 173 - -
Seca6g01911 358 Gene3D Classic Zinc Finger 229 296 - -
Seca6g01911 358 SUPERFAMILY beta-beta-alpha zinc fingers 147 173 IPR036236 -
Seca6g01911 358 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Seca6g01911 358 FunFam Zinc finger 45-like 147 173 - -
Seca6g01911 358 Pfam Zinc finger, C2H2 type 151 172 IPR013087 -
Seca6g01911 358 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01911 Seca-Chr6 77010128 77011204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01911 122 301 C2H2 Transcription Factor Family AT1G34370 59.239 3.50e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca6g01911 zf-C2H2 0.00025 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01911 - - gmx:100809135 469.159