Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01909 ATGTGTTTTTGGGGGAATACACACTTACACTGTGAACTTAACAAACAAGATTTGTTAAGTGTAATAATTGAAGGATGTTATATATCATGCAGTTCCTTGCAAGGGAACAACATCACCGGTGACATACCAAAAGAAATAGGAAATCTTACAAGCTTGGTCAGATTGGATCTGGAGAATAACAGATTAACTGGTGAAATACCATCTTCCCTTGGTAATCTTAAAAAGCTTCAATTCTTGACACTGAGTCAAAACAATCTCAATGGGACAATCCCAGAATCACTTGCCAATCTCCCGAGCTTGATCAATGTCCTGCTAGATTCTAATGATCTTAGTGGAAAGATTCCAGAGCAGTTATTCAACGTTCTCAAGTACAATTTCTCTGGTAATAAGTTGAATTGCGGCGTGAATTATCATAATCTTTGCATATCTGATAATGCAGATCAAGGTTCATCACACAAACCAAAAGTAGGCCTCATAGTTGGATTAGTTATAGGTTTAGCTGTTATCCTTTTTCTTGGCGGCCTGCTGTTTTTCTGGTGCAAGGGGTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAATTGATCGGCGAATTACATTTGGTCAAATAAAAAGGTTTTCCTGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTCTATAAAGGTGTTCTAGTTGATGGCACAAAAGTTGCTGTCAAAAGGTTAACTGATTTTGAAAGTCCTGGGGGTGATGCAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTAGCTGTCCATAGGAACCTGTTACGGCTCATTGGGTTTTGTACTACTCCAACTGAACGCCTCTTGGTTTATCCCTTCATGCAGAACTTGAGTGTTGCCCATCGTTTACGAGAACTCAAACCTGGGGAACCTGTTTTTGATTGGGCTACAAGAAGACGAGTGGCTCTGGGAACTGCCCGTGCCCTAGAATATCTCCATGAGCAATGCGATCCTAAGATTATTCATAGGGATGTGAAGGCAGCTAATATATTACTAGATGGAGATTTTGAAGCAGTTGTTGGTGACTTTGGGTTGGCAAAATTAGTCGATGTTCGAAAGACTAATGTGACAACTCAAGTTCGTGGGACAATGGGCCATATAGCTCCTGAATACTTGTCCACTGGAAAATCTTCAGAAAGGACAGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGTGCAATTGACTTTTCACGTTTGGAAGATGAAGATGATGTGTTACTGCTTGACCATGTTAAGAAACTACAACGGGAGAAAAAACTGGATACTATTGTTGACAGCAACCTTAACAAAAATTACAACATAGAAGAGGTTGAAATGATTGTACAAGTTGCATTACTTTGCACACAAGCATCGCCAGAGGACCGTCCCGTAATGTCAGAGGTTGTAAGAATGCTAGAGGGAGAAGGGTTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTGACTCGGAGGCAAGACTATGAGAGACTACAAAGGAGATTGGAGTTTGGAGAAGATTCGGTTTATAATCAAGATGCCATTGAGTTGTCTGGTGGAAGATGA 1629 0.4101 MCFWGNTHLHCELNKQDLLSVIIEGCYISCSSLQGNNITGDIPKEIGNLTSLVRLDLENNRLTGEIPSSLGNLKKLQFLTLSQNNLNGTIPESLANLPSLINVLLDSNDLSGKIPEQLFNVLKYNFSGNKLNCGVNYHNLCISDNADQGSSHKPKVGLIVGLVIGLAVILFLGGLLFFWCKGYKREVFVDVAGEIDRRITFGQIKRFSWRELQIATDNFSEKNVLGQGGFGKVYKGVLVDGTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAHRLRELKPGEPVFDWATRRRVALGTARALEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEDEDDVLLLDHVKKLQREKKLDTIVDSNLNKNYNIEEVEMIVQVALLCTQASPEDRPVMSEVVRMLEGEGLAERWEEWQHVEVTRRQDYERLQRRLEFGEDSVYNQDAIELSGGR. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01909 542 Pfam Leucine rich repeat 51 110 IPR001611 GO:0005515
Seca6g01909 542 Gene3D Transferase(Phosphotransferase) domain 1 296 513 - -
Seca6g01909 542 SUPERFAMILY L domain-like 20 143 - -
Seca6g01909 542 Pfam Protein kinase domain 220 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01909 542 SUPERFAMILY Protein kinase-like (PK-like) 198 494 IPR011009 -
Seca6g01909 542 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 26 141 - -
Seca6g01909 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 342 354 IPR008271 GO:0004672|GO:0006468
Seca6g01909 542 SMART serkin_6 219 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01909 542 ProSiteProfiles Protein kinase domain profile. 219 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01909 542 Gene3D Phosphorylase Kinase; domain 1 188 295 - -
Seca6g01909 542 ProSitePatterns Protein kinases ATP-binding region signature. 225 247 IPR017441 GO:0005524
Seca6g01909 542 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 32 504 - -
Seca6g01909 542 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 387 498 - -
Seca6g01909 542 Gene3D Ribonuclease Inhibitor 9 142 IPR032675 -
Seca6g01909 542 FunFam Somatic embryogenesis receptor kinase 1 188 295 - -
Seca6g01909 542 FunFam Somatic embryogenesis receptor-like kinase 1 296 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01909 Seca-Chr6 76967389 76972209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01909 32 542 Receptor kinase-like Gene Family AT5G10290 78.835 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca6g01909 Pkinase 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01909 - - gmx:100793416 904.434