Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01890 ATGGCAGATGAAGCACAAAATGAGCTGAAGGAGGAGGTTTCTGATATTGCCCCATTCGATCCTACCAAGAAGAAGAAGAAAAAGAAAATCACAATTGTAGATCCTGCTGATGATTCAGTGGACAAGTTGGCTGAGAAGACAGAAAATCTTTCAGTTAGCTTTTCAATTGCAGTTTCTGATAGTGCTGAGAGTACATTTACTGGTTTAAAAAAGAAGAAGAAGAAGCTTGTTGAAATCAGTAACTTAAATGATGAGAGTGGAGATGCAATTGACGATTTGGATGATCATGCTGAAGAAGATGGAGAAGATGCCATTTCCTTGCAACCTCGTTATCCTTGGGAAGGGAGTGACCGAGATTATAAATACGCGGAGTATTTTCTGCTAGGAGAATTTCCCCCACTCTGTATTCTGATGTGTTTTTGGCAGCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTTGCTGGAGACCGGCGGAGGACTGTTATGAGGCCTCCTCAAGTTCTACGTGAGGGCACAAAGAAAACTGTTTTTGTGAATTTTATGGATCTATGCAAAACGATGCATCGGCAGCCAGATCATGTCATGGCTTTCTTGCTTGCTGAACTGGGTACAAGTGGCTCTCTTGATGGACAGCAGAGATTGGTTGTGAAGGGAAGATTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAATGAGTATGTCATTTGCCTCGGATGCAAAAGTCCTGACACAATACTTTCTAAGGAAAACCGTTTATTCTTTCTCCGGTGTGAAAAGTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGCGTTGGCCGTAGGAACGCAGGGACATAA 879 0.4266 MADEAQNELKEEVSDIAPFDPTKKKKKKKITIVDPADDSVDKLAEKTENLSVSFSIAVSDSAESTFTGLKKKKKKLVEISNLNDESGDAIDDLDDHAEEDGEDAISLQPRYPWEGSDRDYKYAEYFLLGEFPPLCILMCFWQLLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01890 292 SMART eIF2Bneu4 162 271 IPR002735 GO:0003743|GO:0006413
Seca6g01890 292 MobiDBLite consensus disorder prediction 1 31 - -
Seca6g01890 292 FunFam Eukaryotic translation initiation factor 2 subunit 138 277 - -
Seca6g01890 292 Pfam Domain found in IF2B/IF5 161 270 IPR002735 GO:0003743|GO:0006413
Seca6g01890 292 MobiDBLite consensus disorder prediction 1 22 - -
Seca6g01890 292 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 241 276 IPR016190 GO:0003743|GO:0006413
Seca6g01890 292 Gene3D - 138 277 - -
Seca6g01890 292 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 140 244 IPR016189 GO:0003743|GO:0006413
Seca6g01890 292 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 142 291 IPR045196 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01890 Seca-Chr6 76767501 76773705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01890 1 288 Eukaryotic Initiation Factors Gene Family AT5G20920 72.069 1.34e-133 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01890 K03238 - gmx:100775688 452.21