Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01882 ATGGAAGAACGGTATGAGATTATTAAAGAAATTGGGTCAGGAAACTTTGGGGTAGCAAAGCTGGTAAAGGAGAAACGAAGTGGTGAGCTATATGCTGTCAAGATCATTGAGAGAGGCCAAAAGATTGATGAGCATGTGCAAAGGGAGATTATAAATCACAGGTCCTTGAAACATCCCAATATCATTAGATTTAAGGAGGTGTTGTGCACTCCAACTCATCTAGCCATAGTCATGGAATATGCTGCAGGGGGAGAATTGTTTGAAAGAATATGCAATGCTGGTAGATTTTCTGAGGACGAGGCAAGATATTTCTTCCGCCAATTGATTTCTGGAGTCAGCTATTGCCATTCAATGGAAATTTGCCACAGAGATCTTAAGCTGGAAAACACACTCTTAGATGGAAGCTCAGCACCACAACTCAAAATATGCGACTTTGGTTACTCCAAGTCATCTGTTCTGCACTCTCAACCTAAATCTACCGTGGGAACCCCAGCATATATTGCACCAGAGGTCTTGTCAAGAAGAGAATATGATGGGAAGGTTGCTGATGTTTGGTCTTGTGGGGTGACCTTATATGTGATGCTAGTTGGGGGTTATCCTTTTGAAGATCCAGATGATCCACGGAACTTCAGAAAAACACTTCAGAGAATTATCGGGGTCCACTATTCTATTCCAGACTATGTTCGTATCTCCAAAGATTGTAGACACCTTCTATCTCGAATTTTTGTGGCCAATACGGAGATGAGAATCAGCATCCCAGAAATTAAAAAGCACCCATGGTTCCTTAATAACTTGCCAATGGAATTTGTGGATGAAGGGGAAAATAAGTTGTTGCAAAATGATATGAATGGTGTGGATGATTCTCCTCAGAGTATTGAGGAAATACTGTCAATAATTCAAGAGGCAAGGAAGCCAGGTGAGGGCCCAAAAGTTGATGGGCAATTTGTGGGAGGTGGAATGGATCTTGATGAGATGGATTCAGATGATGATGATATAGAAACAAGTAGTGATTTTGATTTTGTCTGTTAA 1029 0.4101 MEERYEIIKEIGSGNFGVAKLVKEKRSGELYAVKIIERGQKIDEHVQREIINHRSLKHPNIIRFKEVLCTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFRQLISGVSYCHSMEICHRDLKLENTLLDGSSAPQLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTLQRIIGVHYSIPDYVRISKDCRHLLSRIFVANTEMRISIPEIKKHPWFLNNLPMEFVDEGENKLLQNDMNGVDDSPQSIEEILSIIQEARKPGEGPKVDGQFVGGGMDLDEMDSDDDDIETSSDFDFVC. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01882 342 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Seca6g01882 342 FunFam Aurora kinase A 1 84 - -
Seca6g01882 342 PANTHER SERINE/THREONINE KINASE 3 287 - -
Seca6g01882 342 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Seca6g01882 342 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01882 342 SUPERFAMILY Protein kinase-like (PK-like) 3 278 IPR011009 -
Seca6g01882 342 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01882 342 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Seca6g01882 342 CDD STKc_SnRK2 4 260 - -
Seca6g01882 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Seca6g01882 342 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Seca6g01882 342 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01882 Seca-Chr6 76608830 76611936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01882 4 290 CBL-interacting serine-threonine protein kinases AT4G24400 41.751 2.17e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca6g01882 Pkinase 8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01882 K14498 - gmx:100807981 560.836