Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01869 ATGAAGAGACTCAACAACTCATCAGATTCTTCGGGTGCTCTCATGACAATCTGTCCATCAACAGACGAACACAGTCCAAGCAACAACCACGTGTATGGTAGAGAGTTCCAATCGATGTTGGATGGGCTTGATGAGGAAGGGTGTATTGAAGAACCAGGACACCACTCTGAGAAGAAGCGTAGACTAAACATCGATCAAGTCAAGGCTTTAGAGAAGAACTTCGAGGTAGAAAACAAGCTTGAACCTGAGAGAAAAGTGAAGCTTGCACAAGAACTTGGGTTGCAGCCTAGACAAGTAGCTGTTTGGTTCCAAAACCGTCGAGCTAGATGGAAAACCAAGCAATTGGAGAGAGATTATGGCGTTCTCAAAGCCAATTATGATGCACTTAAGCTTAACTATGATGCTCTCAATAAGGACAATGAAATTTTACACAAGGAGATTAAGGAACTGAAATCAAGGTTGCAAGAAGGGATTAACACTGCAAGCGGTGTTTCGGTGAAGGAAGAGATAACGATGAAGCCTAATTCAGAAGACAACAAAATGTTTGAAAGGAGTAAGAGTAAGAATAAGAGTAACAACCCTTCTGCTGAAAACTCTGTTCCTGGTTCAGAGTCAAAGGATCAATTGAATTATGACTGTTTCAAAAGCAACGATGATGTTAGAGCCGCTTCACTCTTCAAAGACGGTTCTTCTGACAGCGATTCAAGCGCAATCTTGAATGAAGACAACAGCCCCAAAGCAGCTATTTCTTCATCTGGGGTTCTTCAAAATCACAACTTTTTGTTATCCCCTGATGATGAGTCTTCTCCATTGAAATTCAATTGCTCTATATCGTCCTCGTCTTCCTTCATGAACTGCTTTCAATACCAGAAACCGTACCAGGCACAGTATGTGAAGATGGAAGAGCACAATTTCTTAAGCGCAGATGAGGCCTGCAATTTCTTCTCAGATGAGCAAGCACCGACCCTTCATTGGTACTGTCCAGACCAGTGGAGTTAA 999 0.4234 MKRLNNSSDSSGALMTICPSTDEHSPSNNHVYGREFQSMLDGLDEEGCIEEPGHHSEKKRRLNIDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDALNKDNEILHKEIKELKSRLQEGINTASGVSVKEEITMKPNSEDNKMFERSKSKNKSNNPSAENSVPGSESKDQLNYDCFKSNDDVRAASLFKDGSSDSDSSAILNEDNSPKAAISSSGVLQNHNFLLSPDDESSPLKFNCSISSSSSFMNCFQYQKPYQAQYVKMEEHNFLSADEACNFFSDEQAPTLHWYCPDQWS. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01869 332 MobiDBLite consensus disorder prediction 188 208 - -
Seca6g01869 332 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Seca6g01869 332 MobiDBLite consensus disorder prediction 165 208 - -
Seca6g01869 332 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Seca6g01869 332 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Seca6g01869 332 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Seca6g01869 332 SMART HOX_1 56 117 IPR001356 GO:0003677
Seca6g01869 332 Pfam Homeobox associated leucine zipper 113 155 IPR003106 GO:0006355|GO:0043565
Seca6g01869 332 CDD homeodomain 58 114 IPR001356 GO:0003677
Seca6g01869 332 MobiDBLite consensus disorder prediction 1 31 - -
Seca6g01869 332 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Seca6g01869 332 FunFam Homeobox-leucine zipper protein HAT5 51 115 - -
Seca6g01869 332 Coils Coil 112 160 - -
Seca6g01869 332 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 282 IPR045224 GO:0003700
Seca6g01869 332 Gene3D - 53 120 - -
Seca6g01869 332 SUPERFAMILY Homeodomain-like 40 115 IPR009057 -
Seca6g01869 332 MobiDBLite consensus disorder prediction 171 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01869 Seca-Chr6 76093772 76095894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01869 1 331 Homeobox Transcription Factor Family AT2G22430 45.429 1.37e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca6g01869 Homeodomain 9.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01869 K09338 - qsu:112039557 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06101 12 152899475 152901596 Seca6g01869 6 76093772 76095894 PCT