Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01861 ATGTGCTTGATATTGGTCGGTTTAACCTCTGTAGGTCTCCTCATGCTCATGCTTTCAATCTACATCCGCCATTGCACCGAACATTTCAACAGCGGCGGCCACACCGTAACAGATCACTGCACCCCCGACTTCAACCGCGAGATCATCGACAAGTGCCCTGTGTTTCCTTACTCCACCATCAAAGATCTCAAAATCGGGAGAGGAACACTCGAATGTGCGGTTTGCTTGACGGAGTTTGAAGATACGGACAACGTGCGTTTTCTCCCAAAATGCAACCACGTTTTCCACCAAGATTGTATTGATGTCTGGTTACAATCTCACATGAATTGCCCCGTTTGTCGTTCTAACCTCACCTCCGACGTCGTTTCAATTGACATCCCAAATCATGAAGAAGGACAGAGCAGCAGAAATAATGTTGTTGTTATTGGTGAGGCAGAAGTTGAACCTGACAGTGACAGTACTGACGGTGACGATGTTGTTAGTGCACGGGAATCGAGAATGTTGGAGAAGCTTCCTCGGTCACATTCGACAGGTCATTCTTTGGAGGAGAAGTACACTCTGAGGTTGCCTGAGGAAGTGAGGAAGAATATTCTTGGGAATCATGGGAGGATGCGGAGTAGTGATGGTGTGATACTGCCAGGTGAATGGAGTGGGAAGAACGTGGAGCGGTGGTCATTGTCCATGTCTCCGACTTGTTGGATGCCAGTGGTTTGCCAGGGAGCGTCAACCAGTACTCTTCCGGTTTGA 747 0.4846 MCLILVGLTSVGLLMLMLSIYIRHCTEHFNSGGHTVTDHCTPDFNREIIDKCPVFPYSTIKDLKIGRGTLECAVCLTEFEDTDNVRFLPKCNHVFHQDCIDVWLQSHMNCPVCRSNLTSDVVSIDIPNHEEGQSSRNNVVVIGEAEVEPDSDSTDGDDVVSARESRMLEKLPRSHSTGHSLEEKYTLRLPEEVRKNILGNHGRMRSSDGVILPGEWSGKNVERWSLSMSPTCWMPVVCQGASTSTLPV. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01861 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 165 - -
Seca6g01861 248 SMART ring_2 72 113 IPR001841 -
Seca6g01861 248 CDD RING-H2_EL5-like 71 114 - -
Seca6g01861 248 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Seca6g01861 248 Pfam Ring finger domain 71 114 IPR001841 -
Seca6g01861 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 120 IPR013083 -
Seca6g01861 248 SUPERFAMILY RING/U-box 71 120 - -
Seca6g01861 248 FunFam E3 ubiquitin-protein ligase ATL6 34 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01861 Seca-Chr6 75699801 75700580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01861 1 223 Rapid Response to Elicitors AT3G05200 36.255 6.06e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01861 K10664 - vvi:132254098 170.629